Detailed information NTG0701018

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF680_RS19045
• Genome accession: NZ_CP099602
• Coordinates: 4283710..4285944 (-)
• Length: 744 a.a.
• NCBI ID: WP_252876731.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6MONTID1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4278710..4290944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF680_RS19010 (NF680_19010)	murB	4279088..4280107 (-)	1020	WP_095181616.1	UDP-N-acetylmuramate dehydrogenase	-
NF680_RS19015 (NF680_19015)	-	4280104..4280568 (-)	465	WP_095181615.1	low molecular weight protein-tyrosine-phosphatase	-
NF680_RS19020 (NF680_19020)	kdsB	4280568..4281332 (-)	765	WP_024013932.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF680_RS19025 (NF680_19025)	-	4281329..4281514 (-)	186	WP_003179363.1	Trm112 family protein	-
NF680_RS19030 (NF680_19030)	lpxK	4281538..4282548 (-)	1011	WP_252876730.1	tetraacyldisaccharide 4'-kinase	-
NF680_RS19035 (NF680_19035)	-	4282548..4282976 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF680_RS19040 (NF680_19040)	exbB	4282973..4283608 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF680_RS19045 (NF680_19045)	comA	4283710..4285944 (-)	2235	WP_252876731.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF680_RS19050 (NF680_19050)	-	4286081..4286599 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
NF680_RS19055 (NF680_19055)	-	4286739..4287518 (-)	780	WP_056788203.1	ABC transporter permease	-
NF680_RS19060 (NF680_19060)	-	4287515..4288447 (-)	933	WP_041479460.1	ABC transporter ATP-binding protein	-
NF680_RS19065 (NF680_19065)	-	4288581..4289204 (-)	624	WP_095181610.1	glutathione S-transferase	-
NF680_RS19070 (NF680_19070)	-	4289248..4289907 (-)	660	WP_252876732.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82154.38 Da
• Isoelectric Point: 9.9157

>NTDB_id=701018 NF680_RS19045 WP_252876731.1 4283710..4285944(-) (comA) [Pseudomonas siliginis strain OTU6MONTID1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALILGSLGAILLLFPRGVPMRPLGWPLMLLLI
WPPQERIEERRADVWQIDVGQGLAILVRTRHHALLYDAGPRFGDFDIGERVVLPALRKLNVQQLDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQIWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=701018 NF680_RS19045 WP_252876731.1 4283710..4285944(-) (comA) [Pseudomonas siliginis strain OTU6MONTID1]
ATGCGTACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCACTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGCGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTCGCCGCAGTGATGTATCTGCTG
GTTGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCCTGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCAGGTTTCTGGCTGTCCTTCGCGGCCGTTGCAGTACTGATTTTCACCTTCGGCGGGCGGCTTGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCAGCCGCCATTCCACTCTGGGCGTTGATCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTTCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGATGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTCTTGT
GCGCACGCGACATCATGCACTGCTCTATGACGCCGGCCCGCGCTTCGGCGATTTCGATATCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAACAGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGATCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCTCTGCTCAAAGCCTTGCAGCCCGAAGCGGTACTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGTGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.421	96.64	0.613
comA	Ralstonia pseudosolanacearum GMI1000	35.897	100	0.376