Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF680_RS19040 Genome accession   NZ_CP099602
Coordinates   4282973..4283608 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4277973..4288608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS19005 (NF680_19005) - 4278367..4278837 (-) 471 WP_252876729.1 (2Fe-2S)-binding protein -
  NF680_RS19010 (NF680_19010) murB 4279088..4280107 (-) 1020 WP_095181616.1 UDP-N-acetylmuramate dehydrogenase -
  NF680_RS19015 (NF680_19015) - 4280104..4280568 (-) 465 WP_095181615.1 low molecular weight protein-tyrosine-phosphatase -
  NF680_RS19020 (NF680_19020) kdsB 4280568..4281332 (-) 765 WP_024013932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF680_RS19025 (NF680_19025) - 4281329..4281514 (-) 186 WP_003179363.1 Trm112 family protein -
  NF680_RS19030 (NF680_19030) lpxK 4281538..4282548 (-) 1011 WP_252876730.1 tetraacyldisaccharide 4'-kinase -
  NF680_RS19035 (NF680_19035) - 4282548..4282976 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  NF680_RS19040 (NF680_19040) exbB 4282973..4283608 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF680_RS19045 (NF680_19045) comA 4283710..4285944 (-) 2235 WP_252876731.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF680_RS19050 (NF680_19050) - 4286081..4286599 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  NF680_RS19055 (NF680_19055) - 4286739..4287518 (-) 780 WP_056788203.1 ABC transporter permease -
  NF680_RS19060 (NF680_19060) - 4287515..4288447 (-) 933 WP_041479460.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=701017 NF680_RS19040 WP_016771007.1 4282973..4283608(-) (exbB) [Pseudomonas siliginis strain OTU6MONTID1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=701017 NF680_RS19040 WP_016771007.1 4282973..4283608(-) (exbB) [Pseudomonas siliginis strain OTU6MONTID1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAGCTCAAGGAGTTGCGAGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAGCGCTACAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCCTGCTTGGTACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858