Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF679_RS22470 Genome accession   NZ_CP099601
Coordinates   5000666..5002012 (+) Length   448 a.a.
NCBI ID   WP_252868303.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MONEA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4995666..5007012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF679_RS22445 (NF679_22445) pgeF 4995880..4996602 (-) 723 WP_056790460.1 peptidoglycan editing factor PgeF -
  NF679_RS22450 (NF679_22450) rluD 4996599..4997561 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF679_RS22455 (NF679_22455) - 4997713..4998729 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF679_RS22460 (NF679_22460) - 4998857..4999090 (+) 234 WP_252868302.1 PP0621 family protein -
  NF679_RS22465 (NF679_22465) pilS 4999080..5000669 (+) 1590 WP_150742245.1 ATP-binding protein Regulator
  NF679_RS22470 (NF679_22470) pilR 5000666..5002012 (+) 1347 WP_252868303.1 sigma-54 dependent transcriptional regulator Regulator
  NF679_RS22475 (NF679_22475) thiO 5002105..5003205 (-) 1101 WP_252868304.1 glycine oxidase ThiO -
  NF679_RS22480 (NF679_22480) - 5003263..5003664 (-) 402 WP_252868305.1 type IV pilin protein -
  NF679_RS22485 (NF679_22485) - 5003680..5006769 (-) 3090 WP_236168700.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50181.51 Da        Isoelectric Point: 6.4300

>NTDB_id=700996 NF679_RS22470 WP_252868303.1 5000666..5002012(+) (pilR) [Pseudomonas siliginis strain OTU6MONEA1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPNLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=700996 NF679_RS22470 WP_252868303.1 5000666..5002012(+) (pilR) [Pseudomonas siliginis strain OTU6MONEA1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTCGTGCAACACATTCAGCAACGCGATCCAAACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGCCTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCGGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCGCTGTCGATGCAGGTAAAACTGCTGCGAGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.555

98.884

0.777
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

39.853

91.295

0.364