Detailed information NTG0700989

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF679_RS19190
• Genome accession: NZ_CP099601
• Coordinates: 4276590..4278824 (-)
• Length: 744 a.a.
• NCBI ID: WP_252868096.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6MONEA1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4271590..4283824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF679_RS19155 (NF679_19155)	murB	4271968..4272987 (-)	1020	WP_095181616.1	UDP-N-acetylmuramate dehydrogenase	-
NF679_RS19160 (NF679_19160)	-	4272984..4273448 (-)	465	WP_076563814.1	low molecular weight protein-tyrosine-phosphatase	-
NF679_RS19165 (NF679_19165)	kdsB	4273448..4274212 (-)	765	WP_252868094.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF679_RS19170 (NF679_19170)	-	4274209..4274394 (-)	186	WP_003179363.1	Trm112 family protein	-
NF679_RS19175 (NF679_19175)	lpxK	4274418..4275428 (-)	1011	WP_252868095.1	tetraacyldisaccharide 4'-kinase	-
NF679_RS19180 (NF679_19180)	-	4275428..4275856 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF679_RS19185 (NF679_19185)	exbB	4275853..4276488 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF679_RS19190 (NF679_19190)	comA	4276590..4278824 (-)	2235	WP_252868096.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF679_RS19195 (NF679_19195)	-	4278961..4279479 (+)	519	WP_252868097.1	DUF2062 domain-containing protein	-
NF679_RS19200 (NF679_19200)	-	4279619..4280398 (-)	780	WP_056788203.1	ABC transporter permease	-
NF679_RS19205 (NF679_19205)	-	4280395..4281327 (-)	933	WP_252868098.1	ABC transporter ATP-binding protein	-
NF679_RS19210 (NF679_19210)	-	4281461..4282084 (-)	624	WP_252868099.1	glutathione S-transferase	-
NF679_RS19215 (NF679_19215)	-	4282128..4282787 (-)	660	WP_252868100.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81988.10 Da
• Isoelectric Point: 9.9157

>NTDB_id=700989 NF679_RS19190 WP_252868096.1 4276590..4278824(-) (comA) [Pseudomonas siliginis strain OTU6MONEA1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPSGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQIDVGQGLAIFVRTRHHALLYDAGPRFGDFDIGERVVLPALRKLNVQQLDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVRFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSALAVPTQWLQSPHHGSRSSSSMALLKTLQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=700989 NF679_RS19190 WP_252868096.1 4276590..4278824(-) (comA) [Pseudomonas siliginis strain OTU6MONEA1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGACTGGCGGTGAAGTTGA
AGCGCCCGAGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTGGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCTTGGCTGAGGCTCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCTGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGGCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATGGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCGATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTCTTGGCA
CTGCCGCCTCAAGAGCGAATAGAGGAAGGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTTTTGT
GCGCACGCGACATCACGCATTGCTCTATGACGCCGGCCCGCGCTTCGGCGATTTCGATATCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAACAGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAATGGCAGTGGGACGGCGTGCGGTTCCAGCTCTGGCAATGGTCGGCGGCAGATGACAGCA
ACCAGCGTTCCTGTGTGTTGCAGATCGAAGCCAACGGCGAACGCCTGCTGCTCACTGGCGATATCGACACTCATGCCGAG
CGCGTCCTGCTCGACAGCGCCTTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGTCGCAGTTCATCGTC
GATGGCCCTGCTCAAAACCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTATCGCAAACAGGGCCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.282	96.64	0.612
comA	Ralstonia pseudosolanacearum GMI1000	35.256	100	0.37