Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF679_RS19185 Genome accession   NZ_CP099601
Coordinates   4275853..4276488 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain OTU6MONEA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4270853..4281488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF679_RS19150 (NF679_19150) - 4271247..4271717 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  NF679_RS19155 (NF679_19155) murB 4271968..4272987 (-) 1020 WP_095181616.1 UDP-N-acetylmuramate dehydrogenase -
  NF679_RS19160 (NF679_19160) - 4272984..4273448 (-) 465 WP_076563814.1 low molecular weight protein-tyrosine-phosphatase -
  NF679_RS19165 (NF679_19165) kdsB 4273448..4274212 (-) 765 WP_252868094.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF679_RS19170 (NF679_19170) - 4274209..4274394 (-) 186 WP_003179363.1 Trm112 family protein -
  NF679_RS19175 (NF679_19175) lpxK 4274418..4275428 (-) 1011 WP_252868095.1 tetraacyldisaccharide 4'-kinase -
  NF679_RS19180 (NF679_19180) - 4275428..4275856 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  NF679_RS19185 (NF679_19185) exbB 4275853..4276488 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF679_RS19190 (NF679_19190) comA 4276590..4278824 (-) 2235 WP_252868096.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF679_RS19195 (NF679_19195) - 4278961..4279479 (+) 519 WP_252868097.1 DUF2062 domain-containing protein -
  NF679_RS19200 (NF679_19200) - 4279619..4280398 (-) 780 WP_056788203.1 ABC transporter permease -
  NF679_RS19205 (NF679_19205) - 4280395..4281327 (-) 933 WP_252868098.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=700988 NF679_RS19185 WP_016771007.1 4275853..4276488(-) (exbB) [Pseudomonas siliginis strain OTU6MONEA1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=700988 NF679_RS19185 WP_016771007.1 4275853..4276488(-) (exbB) [Pseudomonas siliginis strain OTU6MONEA1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGATATTTTCA
GTGCCTTCACCGGCTCTGGCATGACCACCAATGCCTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858