Detailed information NTG0700959

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF678_RS18830
• Genome accession: NZ_CP099600
• Coordinates: 4267976..4270210 (-)
• Length: 744 a.a.
• NCBI ID: WP_252882494.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6MEDAA1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4262976..4275210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF678_RS18795 (NF678_18795)	murB	4263354..4264373 (-)	1020	WP_252882493.1	UDP-N-acetylmuramate dehydrogenase	-
NF678_RS18800 (NF678_18800)	-	4264370..4264834 (-)	465	WP_095181615.1	low molecular weight protein-tyrosine-phosphatase	-
NF678_RS18805 (NF678_18805)	kdsB	4264834..4265598 (-)	765	WP_041479456.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF678_RS18810 (NF678_18810)	-	4265595..4265780 (-)	186	WP_003179363.1	Trm112 family protein	-
NF678_RS18815 (NF678_18815)	lpxK	4265804..4266814 (-)	1011	WP_095181613.1	tetraacyldisaccharide 4'-kinase	-
NF678_RS18820 (NF678_18820)	-	4266814..4267242 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF678_RS18825 (NF678_18825)	exbB	4267239..4267874 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF678_RS18830 (NF678_18830)	comA	4267976..4270210 (-)	2235	WP_252882494.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF678_RS18835 (NF678_18835)	-	4270347..4270865 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
NF678_RS18840 (NF678_18840)	-	4271005..4271784 (-)	780	WP_056788203.1	ABC transporter permease	-
NF678_RS18845 (NF678_18845)	-	4271781..4272713 (-)	933	WP_076563818.1	ABC transporter ATP-binding protein	-
NF678_RS18850 (NF678_18850)	-	4272847..4273470 (-)	624	WP_252882495.1	glutathione S-transferase	-
NF678_RS18855 (NF678_18855)	-	4273514..4274173 (-)	660	WP_041479462.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82107.28 Da
• Isoelectric Point: 9.7203

>NTDB_id=700959 NF678_RS18830 WP_252882494.1 4267976..4270210(-) (comA) [Pseudomonas siliginis strain OTU6MEDAA1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALILGSLGAILLLFPRGVPMRPLGWPLMLLLI
WPPQERIEERRADVWQIDVGQGLAILVRTRHHALLYDAGPRFGDFDIGERVVLPALRKLNVQQLDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=700959 NF678_RS18830 WP_252882494.1 4267976..4270210(-) (comA) [Pseudomonas siliginis strain OTU6MEDAA1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCGCGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATTGGGGCGACCGGC
ACGATCAAGGATGGTCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGGTTGCTGGCGGCTGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCCTGTGGTCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGATTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTCGGCGGTCGGCTGGGGGC
CTGGCGGTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCAGCCGCCATTCCACTCTGGGCGTTGATCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTTCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGATGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTCTTGT
GCGCACGCGACATCATGCACTGCTCTATGACGCCGGCCCGCGCTTCGGCGATTTCGATATCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAACAGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCTCTGCTCAAAGCCTTGCAGCCCGAAGCGGTACTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CCACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.143	96.64	0.61
comA	Ralstonia pseudosolanacearum GMI1000	35.769	100	0.375