Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF678_RS18825 Genome accession   NZ_CP099600
Coordinates   4267239..4267874 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain OTU6MEDAA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4262239..4272874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF678_RS18790 (NF678_18790) - 4262634..4263104 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  NF678_RS18795 (NF678_18795) murB 4263354..4264373 (-) 1020 WP_252882493.1 UDP-N-acetylmuramate dehydrogenase -
  NF678_RS18800 (NF678_18800) - 4264370..4264834 (-) 465 WP_095181615.1 low molecular weight protein-tyrosine-phosphatase -
  NF678_RS18805 (NF678_18805) kdsB 4264834..4265598 (-) 765 WP_041479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF678_RS18810 (NF678_18810) - 4265595..4265780 (-) 186 WP_003179363.1 Trm112 family protein -
  NF678_RS18815 (NF678_18815) lpxK 4265804..4266814 (-) 1011 WP_095181613.1 tetraacyldisaccharide 4'-kinase -
  NF678_RS18820 (NF678_18820) - 4266814..4267242 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  NF678_RS18825 (NF678_18825) exbB 4267239..4267874 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF678_RS18830 (NF678_18830) comA 4267976..4270210 (-) 2235 WP_252882494.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF678_RS18835 (NF678_18835) - 4270347..4270865 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  NF678_RS18840 (NF678_18840) - 4271005..4271784 (-) 780 WP_056788203.1 ABC transporter permease -
  NF678_RS18845 (NF678_18845) - 4271781..4272713 (-) 933 WP_076563818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=700958 NF678_RS18825 WP_016771007.1 4267239..4267874(-) (exbB) [Pseudomonas siliginis strain OTU6MEDAA1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=700958 NF678_RS18825 WP_016771007.1 4267239..4267874(-) (exbB) [Pseudomonas siliginis strain OTU6MEDAA1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAGCTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGTCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858