Detailed information NTG0700929

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF677_RS19325
• Genome accession: NZ_CP099599
• Coordinates: 4335473..4337707 (-)
• Length: 744 a.a.
• NCBI ID: WP_252884677.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6ESPEB1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4330473..4342707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF677_RS19290 (NF677_19290)	murB	4330851..4331870 (-)	1020	WP_252884675.1	UDP-N-acetylmuramate dehydrogenase	-
NF677_RS19295 (NF677_19295)	-	4331867..4332331 (-)	465	WP_095181615.1	low molecular weight protein-tyrosine-phosphatase	-
NF677_RS19300 (NF677_19300)	kdsB	4332331..4333095 (-)	765	WP_041479456.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF677_RS19305 (NF677_19305)	-	4333092..4333277 (-)	186	WP_003179363.1	Trm112 family protein	-
NF677_RS19310 (NF677_19310)	lpxK	4333301..4334311 (-)	1011	WP_252884676.1	tetraacyldisaccharide 4'-kinase	-
NF677_RS19315 (NF677_19315)	-	4334311..4334739 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF677_RS19320 (NF677_19320)	exbB	4334736..4335371 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF677_RS19325 (NF677_19325)	comA	4335473..4337707 (-)	2235	WP_252884677.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF677_RS19330 (NF677_19330)	-	4337844..4338362 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
NF677_RS19335 (NF677_19335)	-	4338502..4339281 (-)	780	WP_056788203.1	ABC transporter permease	-
NF677_RS19340 (NF677_19340)	-	4339278..4340210 (-)	933	WP_076563818.1	ABC transporter ATP-binding protein	-
NF677_RS19345 (NF677_19345)	-	4340344..4340967 (-)	624	WP_252884678.1	glutathione S-transferase	-
NF677_RS19350 (NF677_19350)	-	4341011..4341670 (-)	660	WP_252884679.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82031.24 Da
• Isoelectric Point: 9.6124

>NTDB_id=700929 NF677_RS19325 WP_252884677.1 4335473..4337707(-) (comA) [Pseudomonas siliginis strain OTU6ESPEB1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRERLLAVDAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPCACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALILGSLGAILLLLPRGVPMRPLGWPLMLLLI
WPPQERIEERRADVWQIDVGQGLAILVRTRHHALLYDAGPRFGDFDIGERVVLPALRKLNVQQLDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=700929 NF677_RS19325 WP_252884677.1 4335473..4337707(-) (comA) [Pseudomonas siliginis strain OTU6ESPEB1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCACTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGCGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCGAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCTGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGCGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGGCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTCGGCGGTCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCAGCCGCCATTCCACTCTGGGCGTTGATCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGATGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTCTTGT
GCGCACGCGACATCATGCACTGCTCTATGACGCCGGCCCGCGCTTCGGCGATTTCGATATCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAACAGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCGTC
GATGGCGCTGTTGAAAGCCTTGCAGCCGGAATCAGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CCACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.143	96.64	0.61
comA	Ralstonia pseudosolanacearum GMI1000	35.769	100	0.375