Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF677_RS19320 Genome accession   NZ_CP099599
Coordinates   4334736..4335371 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain OTU6ESPEB1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4329736..4340371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF677_RS19285 (NF677_19285) - 4330131..4330601 (-) 471 WP_039760186.1 (2Fe-2S)-binding protein -
  NF677_RS19290 (NF677_19290) murB 4330851..4331870 (-) 1020 WP_252884675.1 UDP-N-acetylmuramate dehydrogenase -
  NF677_RS19295 (NF677_19295) - 4331867..4332331 (-) 465 WP_095181615.1 low molecular weight protein-tyrosine-phosphatase -
  NF677_RS19300 (NF677_19300) kdsB 4332331..4333095 (-) 765 WP_041479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF677_RS19305 (NF677_19305) - 4333092..4333277 (-) 186 WP_003179363.1 Trm112 family protein -
  NF677_RS19310 (NF677_19310) lpxK 4333301..4334311 (-) 1011 WP_252884676.1 tetraacyldisaccharide 4'-kinase -
  NF677_RS19315 (NF677_19315) - 4334311..4334739 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  NF677_RS19320 (NF677_19320) exbB 4334736..4335371 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF677_RS19325 (NF677_19325) comA 4335473..4337707 (-) 2235 WP_252884677.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF677_RS19330 (NF677_19330) - 4337844..4338362 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  NF677_RS19335 (NF677_19335) - 4338502..4339281 (-) 780 WP_056788203.1 ABC transporter permease -
  NF677_RS19340 (NF677_19340) - 4339278..4340210 (-) 933 WP_076563818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=700928 NF677_RS19320 WP_016771007.1 4334736..4335371(-) (exbB) [Pseudomonas siliginis strain OTU6ESPEB1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=700928 NF677_RS19320 WP_016771007.1 4334736..4335371(-) (exbB) [Pseudomonas siliginis strain OTU6ESPEB1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAGCTCAAGGAGTTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCTGGCATGACCACCAATGCCTCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858