Detailed information NTG0700901

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NF676_RS19855
• Genome accession: NZ_CP099598
• Coordinates: 4317064..4319298 (-)
• Length: 744 a.a.
• NCBI ID: WP_252886647.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain OTU6BANIB1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4312064..4324298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF676_RS19820 (NF676_19825)	murB	4312442..4313461 (-)	1020	WP_095181616.1	UDP-N-acetylmuramate dehydrogenase	-
NF676_RS19825 (NF676_19830)	-	4313458..4313922 (-)	465	WP_252886645.1	low molecular weight protein-tyrosine-phosphatase	-
NF676_RS19830 (NF676_19835)	kdsB	4313922..4314686 (-)	765	WP_073472249.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NF676_RS19835 (NF676_19840)	-	4314683..4314868 (-)	186	WP_003179363.1	Trm112 family protein	-
NF676_RS19840 (NF676_19845)	lpxK	4314892..4315902 (-)	1011	WP_252886646.1	tetraacyldisaccharide 4'-kinase	-
NF676_RS19845 (NF676_19850)	-	4315902..4316330 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
NF676_RS19850 (NF676_19855)	exbB	4316327..4316962 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NF676_RS19855 (NF676_19860)	comA	4317064..4319298 (-)	2235	WP_252886647.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NF676_RS19860 (NF676_19865)	-	4319435..4319953 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
NF676_RS19865 (NF676_19870)	-	4320093..4320872 (-)	780	WP_056788203.1	ABC transporter permease	-
NF676_RS19870 (NF676_19875)	-	4320869..4321801 (-)	933	WP_095181611.1	ABC transporter ATP-binding protein	-
NF676_RS19875 (NF676_19880)	-	4321935..4322558 (-)	624	WP_150637621.1	glutathione S-transferase	-
NF676_RS19880 (NF676_19885)	-	4322602..4323261 (-)	660	WP_252886648.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82154.38 Da
• Isoelectric Point: 9.9157

>NTDB_id=700901 NF676_RS19855 WP_252886647.1 4317064..4319298(-) (comA) [Pseudomonas siliginis strain OTU6BANIB1]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALILGSLGAILLLFPRGVPMRPLGWPLMLLLI
WPPQERIEERRADVWQIDVGQGLAILVRTRHHALLYDAGPRFGDFDIGERVVLPALRKLNVQQLDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=700901 NF676_RS19855 WP_252886647.1 4317064..4319298(-) (comA) [Pseudomonas siliginis strain OTU6BANIB1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCACTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGCGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCAGCGCTGGTGCTCGGTGATGGCTCTGGGCTCAGTCGCGAGGATTGGCAGGTAC
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTCGCCGCAGTGATGTATCTGCTG
GTTGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCCTGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCAGGTTTCTGGCTGTCCTTCGCGGCCGTTGCAGTACTGATTTTCACCTTCGGCGGGCGGCTTGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCAGCCGCCATTCCACTCTGGGCGTTGATCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTTCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGATGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTCTTGT
GCGCACGCGACATCATGCACTGCTCTATGACGCCGGCCCGCGCTTCGGCGATTTCGATATCGGCGAACGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAACAGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCTCTGCTCAAAGCCTTGCAGCCCGAAGCGGTACTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGTGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.421	96.64	0.613
comA	Ralstonia pseudosolanacearum GMI1000	35.897	100	0.376