Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NF676_RS19850 Genome accession   NZ_CP099598
Coordinates   4316327..4316962 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain OTU6BANIB1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4311327..4321962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF676_RS19815 (NF676_19820) - 4311722..4312192 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  NF676_RS19820 (NF676_19825) murB 4312442..4313461 (-) 1020 WP_095181616.1 UDP-N-acetylmuramate dehydrogenase -
  NF676_RS19825 (NF676_19830) - 4313458..4313922 (-) 465 WP_252886645.1 low molecular weight protein-tyrosine-phosphatase -
  NF676_RS19830 (NF676_19835) kdsB 4313922..4314686 (-) 765 WP_073472249.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NF676_RS19835 (NF676_19840) - 4314683..4314868 (-) 186 WP_003179363.1 Trm112 family protein -
  NF676_RS19840 (NF676_19845) lpxK 4314892..4315902 (-) 1011 WP_252886646.1 tetraacyldisaccharide 4'-kinase -
  NF676_RS19845 (NF676_19850) - 4315902..4316330 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  NF676_RS19850 (NF676_19855) exbB 4316327..4316962 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NF676_RS19855 (NF676_19860) comA 4317064..4319298 (-) 2235 WP_252886647.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NF676_RS19860 (NF676_19865) - 4319435..4319953 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  NF676_RS19865 (NF676_19870) - 4320093..4320872 (-) 780 WP_056788203.1 ABC transporter permease -
  NF676_RS19870 (NF676_19875) - 4320869..4321801 (-) 933 WP_095181611.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=700900 NF676_RS19850 WP_016771007.1 4316327..4316962(-) (exbB) [Pseudomonas siliginis strain OTU6BANIB1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=700900 NF676_RS19850 WP_016771007.1 4316327..4316962(-) (exbB) [Pseudomonas siliginis strain OTU6BANIB1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAGCTCAAGGAGTTGCGAGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAGCGCTACAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCCTGCTTGGTACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858