Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP45_RS11465 Genome accession   NZ_CP115270
Coordinates   2401316..2401912 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2396316..2406912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS11445 (PCP45_11450) aroK 2397447..2397965 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP45_RS11450 (PCP45_11455) pilQ 2397977..2400121 (-) 2145 WP_329038454.1 type 4a pilus secretin PilQ Machinery gene
  PCP45_RS11455 (PCP45_11460) comL/pilP 2400175..2400699 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP45_RS11460 (PCP45_11465) pilO 2400696..2401319 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP45_RS11465 (PCP45_11470) pilN 2401316..2401912 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP45_RS11470 (PCP45_11475) pilM 2401912..2402976 (-) 1065 WP_034074518.1 type IV pilus assembly protein PilM Machinery gene
  PCP45_RS11475 (PCP45_11480) - 2403161..2405632 (+) 2472 WP_058169786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=700646 PCP45_RS11465 WP_003095839.1 2401316..2401912(-) (pilN) [Pseudomonas aeruginosa strain F019]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700646 PCP45_RS11465 WP_003095839.1 2401316..2401912(-) (pilN) [Pseudomonas aeruginosa strain F019]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369