Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP45_RS11455 Genome accession   NZ_CP115270
Coordinates   2400175..2400699 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2395175..2405699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS11440 (PCP45_11445) aroB 2396291..2397397 (-) 1107 WP_080911875.1 3-dehydroquinate synthase -
  PCP45_RS11445 (PCP45_11450) aroK 2397447..2397965 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP45_RS11450 (PCP45_11455) pilQ 2397977..2400121 (-) 2145 WP_329038454.1 type 4a pilus secretin PilQ Machinery gene
  PCP45_RS11455 (PCP45_11460) comL/pilP 2400175..2400699 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP45_RS11460 (PCP45_11465) pilO 2400696..2401319 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP45_RS11465 (PCP45_11470) pilN 2401316..2401912 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP45_RS11470 (PCP45_11475) pilM 2401912..2402976 (-) 1065 WP_034074518.1 type IV pilus assembly protein PilM Machinery gene
  PCP45_RS11475 (PCP45_11480) - 2403161..2405632 (+) 2472 WP_058169786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=700644 PCP45_RS11455 WP_003095836.1 2400175..2400699(-) (comL/pilP) [Pseudomonas aeruginosa strain F019]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=700644 PCP45_RS11455 WP_003095836.1 2400175..2400699(-) (comL/pilP) [Pseudomonas aeruginosa strain F019]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362