Detailed information NTG0070062

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ALSL_RS08525
• Genome accession: NZ_AP018560
• Coordinates: 1828814..1829671 (+)
• Length: 285 a.a.
• NCBI ID: WP_126538283.1
• Uniprot ID: A0A2Z6E693
• Organism: Aerosticca soli strain Dysh456
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1823814..1834671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ALSL_RS08500 (ALSL_1707)	-	1824812..1825405 (-)	594	WP_126538273.1	YhgN family NAAT transporter	-
ALSL_RS08505 (ALSL_1708)	-	1825439..1826209 (-)	771	WP_126538275.1	SDR family NAD(P)-dependent oxidoreductase	-
ALSL_RS08510 (ALSL_1709)	grxD	1826206..1826532 (-)	327	WP_126538277.1	Grx4 family monothiol glutaredoxin	-
ALSL_RS08515 (ALSL_1710)	-	1826642..1827220 (+)	579	WP_126538279.1	Fe-Mn family superoxide dismutase	-
ALSL_RS08520 (ALSL_1711)	pilC	1827419..1828687 (+)	1269	WP_126538281.1	type II secretion system F family protein	Machinery gene
ALSL_RS08525 (ALSL_1712)	pilD	1828814..1829671 (+)	858	WP_126538283.1	A24 family peptidase	Machinery gene
ALSL_RS08530 (ALSL_1713)	coaE	1829668..1830339 (+)	672	WP_126538285.1	dephospho-CoA kinase	-
ALSL_RS08535 (ALSL_1714)	-	1830412..1831413 (-)	1002	WP_126538287.1	HAMP domain-containing sensor histidine kinase	-
ALSL_RS08540 (ALSL_1715)	-	1831420..1832145 (-)	726	WP_126538289.1	response regulator transcription factor	-
ALSL_RS08545 (ALSL_1716)	-	1832231..1832845 (-)	615	WP_126538291.1	arylesterase	-
ALSL_RS08550 (ALSL_1717)	-	1832844..1833542 (+)	699	WP_126538293.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30764.96 Da
• Isoelectric Point: 9.4903

>NTDB_id=70062 ALSL_RS08525 WP_126538283.1 1828814..1829671(+) (pilD) [Aerosticca soli strain Dysh456]
MLDLPLWAWLVCAGVLGLLVGSFLNVVILRLPARMEALWRREAHEALGLDAGEEPLPPGIVREPSHCPHCGHRLRAFDNI
PLLGWLKLKGRCRHCGARISLQYPLVEAAVAVLSVLVVARLGPGGKALAGLVFTWMLVALTGIDLRTRLLPDQLTYPLLW
LGLLLSLTGLFVPAPMAILGAALGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAWMGPGALLPVILLSSLIGALLGG
ALIVFGRHRREVPIPFGPFLAGAGWLWLLAGDALWGLYAQLAGWR

Nucleotide

• Length: 858 bp

>NTDB_id=70062 ALSL_RS08525 WP_126538283.1 1828814..1829671(+) (pilD) [Aerosticca soli strain Dysh456]
ATGCTCGACCTCCCTTTGTGGGCGTGGCTCGTCTGCGCCGGCGTGCTCGGCCTGCTGGTGGGCAGTTTCCTCAATGTGGT
GATCCTGCGCCTGCCCGCGCGCATGGAAGCGCTGTGGCGACGCGAGGCGCACGAAGCGCTCGGCCTCGACGCCGGCGAGG
AACCCCTGCCGCCCGGCATCGTCCGCGAACCCTCGCACTGCCCGCACTGCGGGCATCGGTTGCGCGCCTTCGACAACATT
CCGCTCTTGGGCTGGCTGAAGCTCAAGGGCCGTTGCCGCCATTGCGGTGCACGCATTTCGCTCCAGTATCCGTTGGTGGA
GGCTGCGGTCGCCGTGTTGAGCGTGCTCGTCGTGGCCCGCTTAGGTCCCGGCGGGAAGGCTCTGGCGGGGCTGGTCTTCA
CCTGGATGCTGGTGGCGCTGACGGGGATCGACCTGCGTACCCGCTTGCTGCCCGATCAGCTCACCTATCCGCTGCTCTGG
CTGGGGCTGCTGCTCTCGCTCACGGGGCTGTTCGTGCCGGCGCCGATGGCGATCCTGGGCGCCGCGCTCGGCTATCTCAG
CCTGTGGAGCGTGTACTGGCTGTTCAAGCTCGCCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGCTGGCCG
CCCTCGGCGCCTGGATGGGGCCTGGGGCATTGCTGCCGGTGATCCTGCTGTCCTCGCTCATCGGCGCGCTGCTGGGCGGG
GCACTGATCGTGTTCGGACGCCATCGCCGCGAGGTGCCGATCCCCTTCGGGCCGTTCCTGGCCGGTGCCGGCTGGCTCTG
GCTGCTGGCCGGCGATGCGCTCTGGGGCCTCTACGCGCAGCTTGCGGGCTGGCGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (131-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

3D structure

• AlphaFold DB: A0A2Z6E693

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.896	97.895	0.498
pilD	Vibrio campbellii strain DS40M4	48.905	96.14	0.47
pilD	Acinetobacter nosocomialis M2	45.487	97.193	0.442
pilD	Acinetobacter baumannii D1279779	45.126	97.193	0.439
pilD	Neisseria gonorrhoeae MS11	46.792	92.982	0.435