Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP09_RS15510 Genome accession   NZ_CP115261
Coordinates   3305856..3306185 (+) Length   109 a.a.
NCBI ID   WP_023084085.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F025     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3300856..3311185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP09_RS15495 (PCP09_15480) - 3301471..3302433 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  PCP09_RS15500 (PCP09_15485) - 3302433..3303470 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  PCP09_RS15505 (PCP09_15490) - 3303668..3305665 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  PCP09_RS15510 (PCP09_15495) comEA/comE1 3305856..3306185 (+) 330 WP_023084085.1 ComEA family DNA-binding protein Machinery gene
  PCP09_RS15520 (PCP09_15505) - 3306402..3307598 (-) 1197 WP_033942683.1 amino acid aminotransferase -
  PCP09_RS15525 (PCP09_15510) uvrB 3307786..3309798 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11339.25 Da        Isoelectric Point: 8.0459

>NTDB_id=700052 PCP09_RS15510 WP_023084085.1 3305856..3306185(+) (comEA/comE1) [Pseudomonas aeruginosa strain F025]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=700052 PCP09_RS15510 WP_023084085.1 3305856..3306185(+) (comEA/comE1) [Pseudomonas aeruginosa strain F025]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTTGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385