Detailed information NTG0699487

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: L1F06_RS16355
• Genome accession: NZ_CP099397
• Coordinates: 3507438..3509651 (-)
• Length: 737 a.a.
• NCBI ID: WP_129481815.1
• Uniprot ID: -
• Organism: Pseudomonas hydrolytica strain DSWY01
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3502438..3514651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1F06_RS16320 (L1F06_016320)	murB	3502853..3503872 (-)	1020	WP_129481441.1	UDP-N-acetylmuramate dehydrogenase	-
L1F06_RS16325 (L1F06_016325)	-	3503869..3504333 (-)	465	WP_003245200.1	low molecular weight protein-tyrosine-phosphatase	-
L1F06_RS16330 (L1F06_016330)	kdsB	3504333..3505097 (-)	765	WP_129481442.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
L1F06_RS16335 (L1F06_016335)	-	3505098..3505283 (-)	186	WP_129481443.1	Trm112 family protein	-
L1F06_RS16340 (L1F06_016340)	lpxK	3505306..3506307 (-)	1002	WP_129481444.1	tetraacyldisaccharide 4'-kinase	-
L1F06_RS16345 (L1F06_016345)	-	3506308..3506736 (-)	429	WP_003245210.1	biopolymer transporter ExbD	-
L1F06_RS16350 (L1F06_016350)	exbB	3506733..3507365 (-)	633	WP_003245211.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
L1F06_RS16355 (L1F06_016355)	comA	3507438..3509651 (-)	2214	WP_129481815.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
L1F06_RS16360 (L1F06_016360)	-	3509791..3510318 (+)	528	WP_129481445.1	DUF2062 domain-containing protein	-
L1F06_RS16365 (L1F06_016365)	-	3510355..3511599 (-)	1245	WP_129481446.1	lipoprotein-releasing ABC transporter permease subunit	-
L1F06_RS16370 (L1F06_016370)	lolD	3511599..3512300 (-)	702	WP_003245217.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
L1F06_RS16375 (L1F06_016375)	-	3512305..3513552 (-)	1248	WP_003245219.1	lipoprotein-releasing ABC transporter permease subunit	-
L1F06_RS16380 (L1F06_016380)	-	3513646..3514212 (+)	567	WP_129481447.1	PilZ domain-containing protein	-
L1F06_RS16385 (L1F06_016385)	-	3514232..3514540 (+)	309	WP_003245222.1	hypothetical protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79870.65 Da
• Isoelectric Point: 10.0607

>NTDB_id=699487 L1F06_RS16355 WP_129481815.1 3507438..3509651(-) (comA) [Pseudomonas hydrolytica strain DSWY01]
MLALALGLLTLRFLPGLPAGWMLAVAAILGLSLLFSRLYPVGLFLLGLAWACCSAQWALDDRLDEELDGRTLWLEGRVVG
LPEVSAGVVRFQLEEAHSRRAELPGRLRLAWYGGPEVRGGERWRLAVNLKRPHGLVNPQSFDYEAWLLARRIGATGTIKA
GERLAPASGLGSWRDGLRQRLLAAPAFGREGGLAALVLGDGSGLSTADWRLLQHTGTVHLMVISGQHIALLAGFLYGLVA
LLAKLGAWPRRWPWLPVACALALAGALAYGMLAGFEVPVRRACVMVALVLLWRLRFRHLGAWWPLLLALLVVLLLEPLAS
LQPGFWLSFSAVAVLILVFGGRLGVWNWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLLAVPWVGFVTVPLALLG
TLLLPVPGVGEGLLWLAGGSLHVLFELLGRIADWLPAWLPSRLPLWAWLLALAGALLLLLPAGIALRLPGVALLLPALFL
PSTAPQEGHAEVWLLDVGQGLSVLVRTREHALLYDAGPRFGDFDSGERIVLPSLRALNLPRLDILLLSHADNDHAGGAAA
ILAGMPVARVVSGEPQRLAHRVQSEPCDSGQSWQWNGVDFRTWQWERAVSGNQASCVLLVEAGGERLLLTGDIDARAEQA
LLQTDFPLAARWLLAPHHGSRSSSSQRFIEAVAPEHVLIARGRHNNFGHPHPQVLQRYQAAGVQVHDSSATGALRVLLGA
QGQAQGLRSQARFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=699487 L1F06_RS16355 WP_129481815.1 3507438..3509651(-) (comA) [Pseudomonas hydrolytica strain DSWY01]
ATGTTGGCGCTGGCCTTGGGCCTGTTGACGCTGCGCTTTCTGCCCGGTTTGCCAGCGGGCTGGATGCTGGCCGTGGCGGC
CATTCTCGGCCTGTCGCTGCTGTTCTCGCGGCTGTACCCCGTCGGTCTGTTTCTGCTCGGCCTGGCCTGGGCCTGCTGCT
CCGCGCAATGGGCGCTGGATGATCGTCTTGACGAAGAGCTGGACGGCCGCACCCTGTGGCTGGAAGGGCGCGTCGTCGGC
TTGCCGGAGGTCTCCGCAGGGGTGGTGCGTTTCCAGCTGGAGGAGGCCCATTCGCGTCGCGCCGAGCTGCCTGGGCGGCT
GCGTCTGGCCTGGTATGGCGGACCGGAAGTGCGCGGCGGCGAGCGCTGGCGTCTGGCAGTCAATCTCAAGCGTCCGCACG
GGCTGGTCAATCCACAGAGCTTCGACTACGAGGCCTGGTTGCTGGCGCGGCGAATCGGCGCCACCGGTACCATCAAGGCC
GGTGAACGCTTGGCGCCCGCCAGTGGCCTGGGCAGTTGGCGCGACGGCCTGCGCCAACGGCTGCTGGCGGCACCTGCCTT
CGGCCGCGAGGGTGGGCTGGCGGCGCTCGTGCTGGGCGACGGCTCCGGCTTGAGCACGGCCGACTGGCGCCTGCTGCAGC
ACACCGGCACGGTGCATCTGATGGTCATCTCCGGTCAGCATATCGCCCTGCTGGCGGGCTTTCTCTATGGTCTGGTGGCC
CTGCTGGCGAAGTTGGGGGCCTGGCCGCGGCGCTGGCCCTGGTTGCCTGTCGCCTGCGCCCTGGCGCTTGCTGGCGCGCT
GGCCTACGGCATGCTGGCCGGCTTCGAGGTGCCGGTACGCCGGGCCTGCGTGATGGTCGCGCTGGTGCTGCTCTGGCGCC
TGCGCTTTCGTCATCTCGGCGCCTGGTGGCCGCTGTTGCTGGCCTTGCTGGTCGTCCTGCTGCTGGAACCATTGGCTTCG
CTACAGCCCGGCTTCTGGCTGTCGTTCTCGGCGGTGGCGGTGCTGATCCTGGTGTTCGGCGGTCGGCTCGGCGTGTGGAA
CTGGTGGCGCGGTCTGACGCGTGCGCAATGGACCATGGCTATCGGTCTGCTGCCGATGATGCTGATCCTCGGCTTGCCGG
TGAGCAGCAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCCTGGGTGGGCTTCGTGACGGTGCCCCTGGCCTTGCTCGGT
ACCCTGCTGTTGCCCGTGCCGGGTGTGGGCGAGGGCCTGCTGTGGTTGGCGGGTGGCTCGCTGCATGTGCTGTTCGAATT
GCTCGGGCGCATCGCCGATTGGCTGCCGGCCTGGTTGCCCAGCCGTCTGCCGCTGTGGGCTTGGCTGCTGGCCTTGGCTG
GCGCGTTGCTGCTGCTCCTGCCCGCCGGCATCGCATTGCGTTTGCCGGGTGTGGCGCTGCTGCTGCCGGCCCTGTTTCTC
CCGTCGACGGCACCGCAGGAGGGGCACGCCGAGGTCTGGCTGCTGGACGTGGGGCAGGGCCTGTCGGTGCTGGTGCGTAC
CCGCGAGCACGCCCTGCTGTACGATGCCGGCCCGCGTTTCGGCGACTTCGACAGCGGCGAGCGCATCGTTCTACCGTCGC
TCCGGGCATTGAATCTGCCGCGCCTCGACATACTTCTACTCAGTCACGCCGATAACGATCATGCCGGTGGCGCGGCCGCC
ATCCTCGCCGGCATGCCGGTCGCGCGAGTGGTCAGTGGCGAGCCGCAGCGCCTGGCGCATCGCGTGCAGTCGGAGCCTTG
CGACTCGGGCCAGAGCTGGCAGTGGAACGGCGTCGACTTCAGAACCTGGCAGTGGGAACGGGCCGTCTCGGGCAATCAGG
CCTCCTGTGTCTTGCTGGTCGAGGCCGGGGGCGAGCGCCTGCTGCTGACCGGCGATATCGACGCTCGCGCCGAGCAGGCC
CTGCTGCAGACGGATTTCCCCCTGGCGGCGCGCTGGTTGCTGGCGCCGCACCATGGCAGTCGCAGCTCATCCAGCCAGCG
CTTCATCGAGGCGGTGGCGCCCGAGCATGTGCTGATCGCCCGTGGTCGCCATAACAATTTCGGTCATCCGCACCCCCAGG
TGCTGCAGCGTTATCAGGCCGCCGGTGTCCAGGTGCACGACAGTTCGGCGACCGGCGCCCTGCGTGTGCTGCTGGGCGCC
CAGGGACAAGCGCAGGGGTTGCGAAGCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-461)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.688	97.422	0.659
comA	Ralstonia pseudosolanacearum GMI1000	36.943	100	0.393