Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L1F06_RS16350 Genome accession   NZ_CP099397
Coordinates   3506733..3507365 (-) Length   210 a.a.
NCBI ID   WP_003245211.1    Uniprot ID   U1ZB92
Organism   Pseudomonas hydrolytica strain DSWY01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3501733..3512365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F06_RS16320 (L1F06_016320) murB 3502853..3503872 (-) 1020 WP_129481441.1 UDP-N-acetylmuramate dehydrogenase -
  L1F06_RS16325 (L1F06_016325) - 3503869..3504333 (-) 465 WP_003245200.1 low molecular weight protein-tyrosine-phosphatase -
  L1F06_RS16330 (L1F06_016330) kdsB 3504333..3505097 (-) 765 WP_129481442.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L1F06_RS16335 (L1F06_016335) - 3505098..3505283 (-) 186 WP_129481443.1 Trm112 family protein -
  L1F06_RS16340 (L1F06_016340) lpxK 3505306..3506307 (-) 1002 WP_129481444.1 tetraacyldisaccharide 4'-kinase -
  L1F06_RS16345 (L1F06_016345) - 3506308..3506736 (-) 429 WP_003245210.1 biopolymer transporter ExbD -
  L1F06_RS16350 (L1F06_016350) exbB 3506733..3507365 (-) 633 WP_003245211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L1F06_RS16355 (L1F06_016355) comA 3507438..3509651 (-) 2214 WP_129481815.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1F06_RS16360 (L1F06_016360) - 3509791..3510318 (+) 528 WP_129481445.1 DUF2062 domain-containing protein -
  L1F06_RS16365 (L1F06_016365) - 3510355..3511599 (-) 1245 WP_129481446.1 lipoprotein-releasing ABC transporter permease subunit -
  L1F06_RS16370 (L1F06_016370) lolD 3511599..3512300 (-) 702 WP_003245217.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22891.18 Da        Isoelectric Point: 8.5156

>NTDB_id=699486 L1F06_RS16350 WP_003245211.1 3506733..3507365(-) (exbB) [Pseudomonas hydrolytica strain DSWY01]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=699486 L1F06_RS16350 WP_003245211.1 3506733..3507365(-) (exbB) [Pseudomonas hydrolytica strain DSWY01]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGCATCGTCGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGCGTCATCCATGAGCTGGAACGCTACCT
CAATGCCCTCGGCACCATCGCCGGTATCGCCCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAACGCGCCAATGCTCGCCGGCGGTATCTCCAAGGCTCTGATCACCACCGCGGCC
GGTCTGATGGTGGCGATCCCGGCGCTGTTCTTCCATCGCTACCTGCAGCGCCGTGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U1ZB92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.048

100

0.89