Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L1F06_RS05045 Genome accession   NZ_CP099397
Coordinates   1103868..1105208 (-) Length   446 a.a.
NCBI ID   WP_129483943.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain DSWY01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1098868..1110208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F06_RS05015 (L1F06_005015) - 1100053..1100490 (-) 438 WP_129483937.1 PilX N-terminal domain-containing pilus assembly protein -
  L1F06_RS05020 (L1F06_005020) - 1100487..1101062 (-) 576 WP_129483938.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L1F06_RS05025 (L1F06_005025) pilV 1101059..1101550 (-) 492 WP_129483939.1 type IV pilus modification protein PilV -
  L1F06_RS05030 (L1F06_005030) - 1101547..1101984 (-) 438 WP_129483940.1 GspH/FimT family pseudopilin -
  L1F06_RS05035 (L1F06_005035) - 1102133..1102642 (-) 510 WP_129483941.1 GspH/FimT family pseudopilin -
  L1F06_RS05040 (L1F06_005040) thiO 1102703..1103806 (+) 1104 WP_129483942.1 glycine oxidase ThiO -
  L1F06_RS05045 (L1F06_005045) pilR 1103868..1105208 (-) 1341 WP_129483943.1 sigma-54 dependent transcriptional regulator Regulator
  L1F06_RS05050 (L1F06_005050) pilS 1105211..1106803 (-) 1593 WP_003243065.1 ATP-binding protein Regulator
  L1F06_RS05055 (L1F06_005055) - 1106793..1107035 (-) 243 WP_129483944.1 PP0621 family protein -
  L1F06_RS05060 (L1F06_005060) - 1107247..1108239 (-) 993 WP_003243069.1 outer membrane protein assembly factor BamD -
  L1F06_RS05065 (L1F06_005065) rluD 1108581..1109555 (+) 975 WP_011921057.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49574.95 Da        Isoelectric Point: 5.8600

>NTDB_id=699474 L1F06_RS05045 WP_129483943.1 1103868..1105208(-) (pilR) [Pseudomonas hydrolytica strain DSWY01]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFVTKPVDLGRLRELVATALRIRSPEGEGAPVDNRLLGDSPPMKALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLAEGSGLSAAKLQPEALEKLKNYRFPGNVRELENMLERAYTLCEDDQISPADLRLADASGPSGETGEASLALIDNLE
DYLEGIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=699474 L1F06_RS05045 WP_129483943.1 1103868..1105208(-) (pilR) [Pseudomonas hydrolytica strain DSWY01]
ATGACCCGCCAGAGAGCCTTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAAATCACCCTCGGCCGGATGAA
GCTGGACACGCGCAGCGCACGCAACGTCAAGGAAGCGCGCGAATGGCTGGCCCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACAGGCCTCGACCTGGTGCAACACATCCAACAGCGCCACCCGCAGGTACCGGTGGCAATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAATGCGCTCAAGGCCGGCGCCTTCGATTTCGTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAGCTGGTCGCCACGGCCCTGCGCATCCGCTCCCCCGAGGGCGAAGGCGCTCCGGTGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCACTGCGCAAGCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGTCTGATCCACGAGCAGGGCCCGCGCGCCGAACAGCCGTT
CGTCCCGGTCAACTGCGGCGCCATCCCTTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GGGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCTGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTACGCGCCGTCGGTGGTCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATTTGGCCGCCGAGGTGGCCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTGCCACCGCTGCGCGAACGCCGCGAGGACATCGCCCAACTGGCCGAGGTCATG
CTCGCCCGCCTGGCCGAGGGTAGCGGTCTGAGCGCCGCCAAGCTGCAGCCCGAAGCGCTGGAGAAACTGAAGAACTATCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGACCAGATCAGCCCCG
CCGACCTACGCCTGGCCGATGCGAGCGGCCCCAGCGGCGAAACCGGCGAGGCCAGCCTGGCGCTGATCGACAATCTGGAA
GACTATCTCGAAGGCATCGAACGCAAACTTATCATGCAGGCGCTCGAAGAAACCCGTTGGAACCGCACGGCGGCGGCCCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGATTGAAGAAGCTGGGGATCGACTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

50

100

0.516