Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   L1F06_RS05050 Genome accession   NZ_CP099397
Coordinates   1105211..1106803 (-) Length   530 a.a.
NCBI ID   WP_003243065.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain DSWY01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100211..1111803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F06_RS05020 (L1F06_005020) - 1100487..1101062 (-) 576 WP_129483938.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L1F06_RS05025 (L1F06_005025) pilV 1101059..1101550 (-) 492 WP_129483939.1 type IV pilus modification protein PilV -
  L1F06_RS05030 (L1F06_005030) - 1101547..1101984 (-) 438 WP_129483940.1 GspH/FimT family pseudopilin -
  L1F06_RS05035 (L1F06_005035) - 1102133..1102642 (-) 510 WP_129483941.1 GspH/FimT family pseudopilin -
  L1F06_RS05040 (L1F06_005040) thiO 1102703..1103806 (+) 1104 WP_129483942.1 glycine oxidase ThiO -
  L1F06_RS05045 (L1F06_005045) pilR 1103868..1105208 (-) 1341 WP_129483943.1 sigma-54 dependent transcriptional regulator Regulator
  L1F06_RS05050 (L1F06_005050) pilS 1105211..1106803 (-) 1593 WP_003243065.1 ATP-binding protein Regulator
  L1F06_RS05055 (L1F06_005055) - 1106793..1107035 (-) 243 WP_129483944.1 PP0621 family protein -
  L1F06_RS05060 (L1F06_005060) - 1107247..1108239 (-) 993 WP_003243069.1 outer membrane protein assembly factor BamD -
  L1F06_RS05065 (L1F06_005065) rluD 1108581..1109555 (+) 975 WP_011921057.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1F06_RS05070 (L1F06_005070) pgeF 1109558..1110283 (+) 726 WP_129483973.1 peptidoglycan editing factor PgeF -
  L1F06_RS05075 (L1F06_005075) - 1110466..1111056 (+) 591 WP_232531463.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58761.90 Da        Isoelectric Point: 8.4720

>NTDB_id=699475 L1F06_RS05050 WP_003243065.1 1105211..1106803(-) (pilS) [Pseudomonas hydrolytica strain DSWY01]
MIADASTLGSTPGRRILRLYHFYRLSIGLALILLISSNLDEQLLDVVHIDLFRSGSWAYLILNIFIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAMALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSESLAEQRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELAGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGDEQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAKQHRIGQVWLRLFRDPSSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=699475 L1F06_RS05050 WP_003243065.1 1105211..1106803(-) (pilS) [Pseudomonas hydrolytica strain DSWY01]
GTGATCGCTGACGCCAGCACCCTCGGCAGCACGCCAGGCCGACGCATCCTCAGGCTCTATCACTTCTATCGCCTGAGCAT
CGGTCTGGCGCTGATCCTGCTGATCTCCAGCAATCTCGACGAGCAGTTGCTCGATGTCGTGCATATCGACCTGTTCCGCA
GCGGCAGCTGGGCCTACCTGATCCTGAACATCTTCATCGCCGTGCTGGTGCAGAAACCCAAGCATCTGATGCAGCTGTTC
AGCCTGGCGCTGGTGGATGTGATCTTTCTCTCCGCGCTGTTCTACGCGGCAGGAGGCACTCCCAGCGGCATCGGCAACCT
GCTGGTGGTGGCCGTGGCCATCGCCAACATCCTGCTGCGCGGCCGTATCGGCCTGCTGATCGCCGCCATTGCCGCGATGG
CGCTGATCTATCTGACCTTCTATCTCAGCCTCAGCCGCCCCGCTGCTGCCGCCCAATACGTTCAGGCGGGCGCGCTGGGT
GCGCTGTGCTTCGCCGGCGCACTGTTCATTCAGGGCATCACTCGCCGCCTGCAGGTCAGCGAAAGCCTCGCCGAACAGCG
CGCCGCCGATGTGGCCAATCTGGAAGAGCTCAATGCCCAGATCCTGCAGCGCATGCGTACCGGCATCCTGGTGCTGGACA
CCCAGCACCGCGTGCTACTGGCCAACCAGGGCGCCACCCAGTTGCTGGGGCGCGGCGAGCTGGCCGGCAAGATCATCGAC
CCGCACTGCCCGGAACTGGTGAAACGCCTGCAGCAGTGGCTACACAACCCCACCCTGCGCCCCGACAGCCTGCAGGCTCA
GGTGGACGGCCCGGTGCTGCAGCCCAGCTTCATTTCCCTGCAACGCGGCGACGAGCAGCACACCCTGGTGTTTCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCTCAGCAGCTCAAGCTCGCCTCGCTCGGCCGACTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGCCACGCCGCCCAGCTGCTGCAGGAGTCGGAGGATCTGCAGGGGCCGGACCAGCG
TCTGGCGCAGATCATCCAGGATCACTCCAAACGCATGAATCTGGTGATCGAGAACGTGCTGCAACTGTCGCGCAGACGCC
AGGCCGAACCGCAGTTGCTCGACCTGAAATACTGGCTGCACCGCTTCGCCAGCGAGTTTCGCAGCTCCGCACCGGCTGAT
CGGCAGATCCATCTGGAGACCCAGGGCGGCAGCCTGCAGACACGCATGGACCCACACCAGCTGACCCAGGTGCTGACCAA
TCTGGTGCAGAACGGCCTGCGCTATAGTGCCAAGCAGCACAGGATCGGCCAGGTCTGGCTACGCCTGTTCCGGGACCCAA
GCAGCGACCTGCCGGTGCTGGAAATCCTCGACGACGGCCCAGGCGTGCCGCCCGAGCAGGAGCAGCACATCTTCGAGCCC
TTCTACACCACCGAGAACAAGGGCACCGGCCTCGGCCTGTATATTTCCCGCGAGCTGTGCCAGGGCAACCAGGCGCGTCT
CGACTACAAACCACGCGAAGGGGGCGGCAGCTGCTTCCGCATCACCTTTGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(201-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666