Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HXS64_RS03090 Genome accession   NZ_AP023235
Coordinates   678479..679111 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain YJ6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 673479..684111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS64_RS03065 yhfG 673611..673778 (+) 168 WP_000736860.1 YhfG family protein -
  HXS64_RS03070 fic 673768..674370 (+) 603 WP_053890806.1 putative adenosine monophosphate-protein transferase Fic -
  HXS64_RS03075 pabA 674402..674965 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  HXS64_RS03080 argD 675051..676271 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  HXS64_RS03085 yhfK 676338..678428 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  HXS64_RS03090 crp 678479..679111 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  HXS64_RS03095 yhfA 679413..679817 (+) 405 WP_001148908.1 OsmC family protein -
  HXS64_RS03100 prkB 679872..680741 (-) 870 WP_001274680.1 phosphoribulokinase -
  HXS64_RS03105 yheU 680795..681013 (-) 219 WP_000907085.1 YheU family protein -
  HXS64_RS03110 yheT 681007..682029 (-) 1023 WP_000057356.1 hydrolase -
  HXS64_RS03115 yheS 682029..683942 (-) 1914 WP_176490962.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=69876 HXS64_RS03090 WP_000242755.1 678479..679111(-) (crp) [Escherichia coli strain YJ6]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=69876 HXS64_RS03090 WP_000242755.1 678479..679111(-) (crp) [Escherichia coli strain YJ6]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment