Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   NE424_RS15140 Genome accession   NZ_CP098795
Coordinates   3142482..3143222 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain VB280821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3137482..3148222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS15125 (NE424_15125) ponA 3138068..3140623 (-) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  NE424_RS15130 (NE424_15130) pilM 3140786..3141844 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NE424_RS15135 (NE424_15135) pilN 3141844..3142485 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  NE424_RS15140 (NE424_15140) pilO 3142482..3143222 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NE424_RS15145 (NE424_15145) pilP 3143233..3143760 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NE424_RS15150 (NE424_15150) pilQ 3143823..3145988 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  NE424_RS15155 (NE424_15155) aroK 3146000..3146569 (+) 570 WP_000643712.1 shikimate kinase AroK -
  NE424_RS15160 (NE424_15160) aroB 3146598..3147680 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=698080 NE424_RS15140 WP_000076101.1 3142482..3143222(+) (pilO) [Acinetobacter baumannii strain VB280821]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=698080 NE424_RS15140 WP_000076101.1 3142482..3143222(+) (pilO) [Acinetobacter baumannii strain VB280821]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683