Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NE421_RS18020 Genome accession   NZ_CP098791
Coordinates   3783925..3784398 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3778925..3789398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS18005 (NE421_18005) pilX 3781554..3782372 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NE421_RS18010 (NE421_18010) pilW 3782369..3783370 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NE421_RS18015 (NE421_18015) pilV 3783371..3783931 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NE421_RS18020 (NE421_18020) fimU 3783925..3784398 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  NE421_RS18025 (NE421_18025) ispH 3784568..3785518 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NE421_RS18030 (NE421_18030) gmk 3785641..3786270 (+) 630 WP_000015937.1 guanylate kinase -
  NE421_RS18035 (NE421_18035) rpoZ 3786343..3786621 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NE421_RS18040 (NE421_18040) - 3786660..3786790 (+) 131 Protein_3519 hypothetical protein -
  NE421_RS18045 (NE421_18045) - 3786830..3788935 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=698042 NE421_RS18020 WP_001214065.1 3783925..3784398(-) (fimU) [Acinetobacter baumannii strain 280820]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=698042 NE421_RS18020 WP_001214065.1 3783925..3784398(-) (fimU) [Acinetobacter baumannii strain 280820]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1