Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NE421_RS18015 Genome accession   NZ_CP098791
Coordinates   3783371..3783931 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3778371..3788931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS18005 (NE421_18005) pilX 3781554..3782372 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NE421_RS18010 (NE421_18010) pilW 3782369..3783370 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NE421_RS18015 (NE421_18015) pilV 3783371..3783931 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NE421_RS18020 (NE421_18020) fimU 3783925..3784398 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  NE421_RS18025 (NE421_18025) ispH 3784568..3785518 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NE421_RS18030 (NE421_18030) gmk 3785641..3786270 (+) 630 WP_000015937.1 guanylate kinase -
  NE421_RS18035 (NE421_18035) rpoZ 3786343..3786621 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NE421_RS18040 (NE421_18040) - 3786660..3786790 (+) 131 Protein_3519 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=698041 NE421_RS18015 WP_002194578.1 3783371..3783931(-) (pilV) [Acinetobacter baumannii strain 280820]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=698041 NE421_RS18015 WP_002194578.1 3783371..3783931(-) (pilV) [Acinetobacter baumannii strain 280820]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414