Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NE421_RS18005 Genome accession   NZ_CP098791
Coordinates   3781554..3782372 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain 280820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3776554..3787372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS17990 (NE421_17990) pilE 3776771..3777196 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  NE421_RS17995 (NE421_17995) pilY2 3777193..3777675 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NE421_RS18000 (NE421_18000) pilY1 3777688..3781542 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NE421_RS18005 (NE421_18005) pilX 3781554..3782372 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NE421_RS18010 (NE421_18010) pilW 3782369..3783370 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NE421_RS18015 (NE421_18015) pilV 3783371..3783931 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NE421_RS18020 (NE421_18020) fimU 3783925..3784398 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  NE421_RS18025 (NE421_18025) ispH 3784568..3785518 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NE421_RS18030 (NE421_18030) gmk 3785641..3786270 (+) 630 WP_000015937.1 guanylate kinase -
  NE421_RS18035 (NE421_18035) rpoZ 3786343..3786621 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NE421_RS18040 (NE421_18040) - 3786660..3786790 (+) 131 Protein_3519 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=698039 NE421_RS18005 WP_000149376.1 3781554..3782372(-) (pilX) [Acinetobacter baumannii strain 280820]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=698039 NE421_RS18005 WP_000149376.1 3781554..3782372(-) (pilX) [Acinetobacter baumannii strain 280820]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989