Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDR85_RS02200 Genome accession   NZ_CP098738
Coordinates   434028..434978 (+) Length   316 a.a.
NCBI ID   WP_263870872.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429028..439978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS02175 (NDR85_02175) rapC 430417..431565 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  NDR85_RS02180 (NDR85_02180) phrC 431549..431671 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NDR85_RS02185 (NDR85_02185) - 431776..431868 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  NDR85_RS02190 (NDR85_02190) - 432015..432125 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  NDR85_RS02195 (NDR85_02195) - 432278..433642 (-) 1365 WP_069487496.1 aspartate kinase -
  NDR85_RS02200 (NDR85_02200) ceuB 434028..434978 (+) 951 WP_263870872.1 petrobactin ABC transporter permease YclN Machinery gene
  NDR85_RS02205 (NDR85_02205) yclO 434971..435918 (+) 948 WP_263870873.1 petrobactin ABC transporter permease YclO -
  NDR85_RS02210 (NDR85_02210) yclP 435912..436670 (+) 759 WP_263870874.1 petrobactin ABC transporter ATP-binding protein YclP -
  NDR85_RS02215 (NDR85_02215) - 436692..437645 (+) 954 WP_044161879.1 siderophore ABC transporter substrate-binding protein -
  NDR85_RS02220 (NDR85_02220) - 437694..439112 (-) 1419 WP_263870875.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34999.43 Da        Isoelectric Point: 9.7777

>NTDB_id=697522 NDR85_RS02200 WP_263870872.1 434028..434978(+) (ceuB) [Bacillus halotolerans strain XE48]
MKLRYLFYLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMKILEKIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=697522 NDR85_RS02200 WP_263870872.1 434028..434978(+) (ceuB) [Bacillus halotolerans strain XE48]
ATGAAGCTACGTTACTTATTTTATCTGCTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATTTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTGA
TCGCGGGCATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAAAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGATAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

100

0.541