Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M5E07_RS15095 Genome accession   NZ_CP098732
Coordinates   3135340..3136749 (+) Length   469 a.a.
NCBI ID   WP_165815717.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130340..3141749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS15075 (M5E07_15075) - 3131038..3131658 (-) 621 WP_252220468.1 hypothetical protein -
  M5E07_RS15080 (M5E07_15080) pbpG 3131808..3132866 (-) 1059 WP_252220470.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  M5E07_RS15085 (M5E07_15085) - 3133084..3133719 (+) 636 WP_016168485.1 response regulator -
  M5E07_RS15090 (M5E07_15090) pilS 3133756..3135315 (+) 1560 WP_252220472.1 ATP-binding protein Regulator
  M5E07_RS15095 (M5E07_15095) pilR 3135340..3136749 (+) 1410 WP_165815717.1 sigma-54 dependent transcriptional regulator Regulator
  M5E07_RS15100 (M5E07_15100) - 3136750..3137916 (-) 1167 WP_116762428.1 S41 family peptidase -
  M5E07_RS15105 (M5E07_15105) gpmI 3137940..3139487 (-) 1548 WP_252220474.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  M5E07_RS15110 (M5E07_15110) lptG 3139609..3140679 (-) 1071 WP_116762424.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52984.11 Da        Isoelectric Point: 6.1590

>NTDB_id=697489 M5E07_RS15095 WP_165815717.1 3135340..3136749(+) (pilR) [Acinetobacter tibetensis strain Y-23]
MVAQQPLVLFVDDEEDLCTLMQMMLSRMGIETHVAYRLTQAKKMLSEHHYDVCFTDLNLPDGSGLELVEEISQRYPQLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPIKQTHLEQLLQKALNNPVQQQASSEDALEQRMLIGQSVPIQQLRVTLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPSDLLESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKTIRPIGSDTEIDVDFRVISASHQDLESLVQQGKFRQDLFFRIHVMDLVLPPLRERGQDILI
LAQHFIHKVCREWEIEVKALTTRAKDFLLAQYYPGNVRELRNIIERAITLSDEDYIDIQHLQSAPLRRSIHVPVSSIEQM
LTTPSELTLVPRKLPDEGLELYLENIEKEILLNALNITHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDE

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=697489 M5E07_RS15095 WP_165815717.1 3135340..3136749(+) (pilR) [Acinetobacter tibetensis strain Y-23]
ATAGTGGCGCAACAACCACTCGTTTTATTTGTAGATGACGAAGAAGACCTATGTACGCTGATGCAAATGATGCTGAGCCG
TATGGGAATCGAGACGCATGTGGCTTATCGTTTAACACAGGCCAAAAAAATGTTGTCTGAACATCACTATGATGTTTGTT
TTACGGATTTAAATCTCCCTGACGGGAGTGGCTTGGAATTGGTTGAGGAAATTTCTCAACGGTATCCTCAGTTGCCTGTC
GCAGTGCTGACGGCCTATGGCAATATGGACATTGCGATTGCCGCACTCAAAGCGGGTGCTTTTGACTTTGTCAGTAAACC
GATTAAACAAACCCATCTGGAACAGTTGTTACAAAAGGCTCTGAACAATCCTGTGCAGCAACAGGCTTCTAGCGAAGATG
CACTTGAACAACGCATGCTGATTGGTCAGTCTGTACCCATCCAACAACTCCGTGTCACCTTAAAGAAGATCGCTCGCTCA
CAAGCTCCCGTGTTTATTACAGGTGAATCTGGTACAGGCAAAGAAGTTGTGGCGAACTTGGTTCATCGCCTCAGTAATCG
CAACGAAGGCCCTTTTATTGCCATTAACTGTGGCGCTATTCCTTCAGACCTGCTCGAAAGTGAGTTGTTTGGACACAAAA
AAGGCAGCTTTACTGGCGCAACTCAAGATAAACAAGGTTTGATTCAATCTGCACATGGCGGTAGTTTATTTTTAGATGAA
ATTGCTGAACTGCCTTTGAATATGCAAGTCAAATTGCTCCGTGCAGTGCAGGAAAAAACCATTCGTCCAATTGGCTCAGA
TACTGAAATTGATGTCGATTTCCGTGTGATCAGTGCCAGCCACCAAGACTTAGAATCACTGGTTCAGCAAGGTAAATTCC
GACAAGACCTATTTTTCCGTATTCATGTGATGGATCTGGTTTTGCCCCCACTCCGCGAACGCGGTCAGGATATTTTAATT
CTTGCGCAACATTTTATTCACAAAGTCTGTCGTGAATGGGAAATTGAAGTCAAAGCATTAACGACACGTGCGAAAGATTT
TTTATTGGCACAATACTATCCAGGGAATGTCCGTGAACTGCGCAATATCATCGAGCGTGCCATTACGTTAAGTGATGAAG
ACTATATTGATATTCAGCATTTACAAAGTGCACCCTTACGTCGCAGCATCCACGTACCAGTATCGTCGATCGAGCAAATG
CTGACAACGCCTTCAGAATTAACTCTAGTGCCTCGAAAATTGCCTGATGAAGGATTAGAACTGTATCTAGAAAATATTGA
AAAAGAGATTCTGCTCAATGCATTGAATATTACGCATTGGAATCGTACTTTGGCTGCCAAAAAACTGGGGATGTCCTTCC
GTTCTTTGCGTTATCGCCTGAAAAAGTTTGGACTGGATACTGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.427

99.787

0.753
  pilR Pseudomonas aeruginosa PAK

48.807

98.294

0.48