Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   M5E07_RS06200 Genome accession   NZ_CP098732
Coordinates   1263066..1263773 (-) Length   235 a.a.
NCBI ID   WP_116763219.1    Uniprot ID   A0A4R0DRL5
Organism   Acinetobacter tibetensis strain Y-23     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1258066..1268773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS06180 (M5E07_06180) - 1259069..1260388 (+) 1320 WP_131321730.1 adenylosuccinate synthase -
  M5E07_RS06185 (M5E07_06185) - 1260554..1260862 (+) 309 WP_252223070.1 phosphoethanolamine transferase domain-containing protein -
  M5E07_RS06190 (M5E07_06190) - 1260975..1261751 (+) 777 WP_116763223.1 M48 family metallopeptidase -
  M5E07_RS06195 (M5E07_06195) - 1261856..1262905 (-) 1050 WP_252223072.1 NADP(H)-dependent aldo-keto reductase -
  M5E07_RS06200 (M5E07_06200) crp 1263066..1263773 (-) 708 WP_116763219.1 cAMP-activated global transcriptional regulator CRP Regulator
  M5E07_RS06205 (M5E07_06205) - 1263922..1264344 (+) 423 WP_116763217.1 OsmC family protein -
  M5E07_RS06210 (M5E07_06210) clpB 1264640..1267222 (+) 2583 WP_116763215.1 ATP-dependent chaperone ClpB -
  M5E07_RS06215 (M5E07_06215) - 1267433..1268722 (+) 1290 WP_252223076.1 DUF945 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26595.19 Da        Isoelectric Point: 4.5914

>NTDB_id=697470 M5E07_RS06200 WP_116763219.1 1263066..1263773(-) (crp) [Acinetobacter tibetensis strain Y-23]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGMESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSGQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEQSNTDDDYEDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=697470 M5E07_RS06200 WP_116763219.1 1263066..1263773(-) (crp) [Acinetobacter tibetensis strain Y-23]
ATGACTTCAAATTTTTCACAGCTAAGCACTGATGCGCTATCGCCAGGTCAATTACCTGAATCAGTCAAAGCATTATTAAA
ACGAGCATATATAAACCGTTATCCTAAACGTACAACTATTGTTGATGCAGGGATGGAATCAAAATCACTTTATTTGATTT
TAAAAGGGTCAGTATCTATTATTTTACGTGAAGATGATGAGCGTGAAATTGTAGTCGCATATTTGAATCCAGGAGACTTC
TTTGGGGAAATGGGGCTCTTCGAATCAAATCCACAGCGTACTGCTGAAGTGCGTACACGTGATGTTTGTGAAATTGCTGA
AATTACCTATGAAAACTTCCACGAGTTAAGTAAGCAATACCCAGACTTGAGCTATGCGGTATTTGCTCAATTGGTTCGTC
GTTTAAAAAACACCACACGTAAAGTAACCGACCTTGCCTTCATTGATGTTTCTGGTCGTATTGCACGCTGCCTGATTGAC
CTGTCAGGACAACCAGAAGCCATGATTTTACCAAATGGCCGCCAAATTCGTATTACACGTCAAGAAATTGGTCGTATTGT
CGGTTGCTCACGCGAAATGGTTGGTCGTGTACTCAAAACCCTCGAAGATCAGGGCATGATTCAAACTGACGGTAAAGCCA
TTCTTATTTTTGATGTATCTTTAGAACAGTCAAATACTGATGATGACTACGAAGATGATGAAGAGTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0DRL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.191

100

0.932
  crp Vibrio cholerae strain A1552

46.829

87.234

0.409
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396