Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M5E07_RS02780 Genome accession   NZ_CP098732
Coordinates   577701..578105 (+) Length   134 a.a.
NCBI ID   WP_116761363.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572701..583105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS02765 (M5E07_02765) rlmD 573117..574508 (+) 1392 WP_252221708.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  M5E07_RS02770 (M5E07_02770) - 574538..576844 (+) 2307 WP_252221711.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  M5E07_RS02775 (M5E07_02775) mazG 576921..577676 (+) 756 WP_252221715.1 nucleoside triphosphate pyrophosphohydrolase -
  M5E07_RS02780 (M5E07_02780) comEA 577701..578105 (+) 405 WP_116761363.1 ComEA family DNA-binding protein Machinery gene
  M5E07_RS02785 (M5E07_02785) pcnB 578239..579687 (+) 1449 WP_252221718.1 polynucleotide adenylyltransferase PcnB -
  M5E07_RS02790 (M5E07_02790) folK 579684..580172 (+) 489 WP_252221721.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  M5E07_RS02795 (M5E07_02795) panB 580215..581024 (+) 810 WP_252221724.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  M5E07_RS02800 (M5E07_02800) panC 581026..581874 (+) 849 WP_116761371.1 pantoate--beta-alanine ligase -
  M5E07_RS02805 (M5E07_02805) rapZ 581896..582747 (+) 852 WP_116761373.1 RNase adapter RapZ -
  M5E07_RS02810 (M5E07_02810) - 582744..583013 (+) 270 WP_116761375.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15338.57 Da        Isoelectric Point: 10.6761

>NTDB_id=697466 M5E07_RS02780 WP_116761363.1 577701..578105(+) (comEA) [Acinetobacter tibetensis strain Y-23]
MQLNFNAIRLLRILTLFTFLIFGLDRVNAQNFDQQYLNWKAQQQAQDARLGSSRTDANYYLSKPSLNTVSGNKIRLNSAT
SEQLQQLSGIGEKKAEAILQYRQQHGKFKTIDELQQIKGIGPKLLQKNKDRLAL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=697466 M5E07_RS02780 WP_116761363.1 577701..578105(+) (comEA) [Acinetobacter tibetensis strain Y-23]
ATGCAGCTGAATTTTAACGCTATTCGATTATTGCGAATATTGACACTTTTCACGTTCCTGATTTTTGGACTAGATCGTGT
AAATGCGCAAAACTTTGATCAACAGTACTTGAATTGGAAAGCACAACAACAAGCCCAAGATGCTCGACTGGGTTCATCAC
GTACCGATGCAAACTATTATTTGTCAAAACCCAGTTTAAATACGGTATCGGGCAATAAAATACGCTTGAATAGTGCAACA
TCAGAACAATTGCAGCAGCTTTCAGGTATCGGTGAGAAAAAAGCCGAAGCGATTTTGCAGTATCGGCAACAGCACGGAAA
GTTCAAAACTATTGATGAGTTACAGCAGATTAAAGGTATTGGACCTAAGCTCTTGCAAAAAAATAAAGACCGCTTAGCAC
TCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

51.538

97.015

0.5
  comEA Acinetobacter baumannii strain A118

45.161

92.537

0.418
  comEA Acinetobacter baumannii D1279779

46.847

82.836

0.388