Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NDR94_RS18525 Genome accession   NZ_CP098731
Coordinates   3937590..3938927 (+) Length   445 a.a.
NCBI ID   WP_026006503.1    Uniprot ID   A0A137YGV3
Organism   Stutzerimonas stutzeri strain NRCB010     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3932590..3943927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR94_RS18500 (NDR94_18470) pgeF 3932620..3933357 (-) 738 WP_011914660.1 peptidoglycan editing factor PgeF -
  NDR94_RS18505 (NDR94_18475) rluD 3933354..3934328 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NDR94_RS18510 (NDR94_18480) - 3934533..3935522 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  NDR94_RS18515 (NDR94_18485) - 3935644..3935877 (+) 234 WP_013984074.1 PP0621 family protein -
  NDR94_RS18520 (NDR94_18490) pilS 3935867..3937459 (+) 1593 WP_011914664.1 sensor histidine kinase Regulator
  NDR94_RS18525 (NDR94_18495) pilR 3937590..3938927 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  NDR94_RS18530 (NDR94_18500) - 3938971..3940029 (-) 1059 WP_011914666.1 DUF2333 family protein -
  NDR94_RS18535 (NDR94_18505) - 3940247..3941842 (+) 1596 WP_011914667.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49558.09 Da        Isoelectric Point: 6.4140

>NTDB_id=697448 NDR94_RS18525 WP_026006503.1 3937590..3938927(+) (pilR) [Stutzerimonas stutzeri strain NRCB010]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQHIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADVM
LRRLAQECGEATARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGLPENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=697448 NDR94_RS18525 WP_026006503.1 3937590..3938927(+) (pilR) [Stutzerimonas stutzeri strain NRCB010]
ATGACCGCGCGCCAGAAAGCCCTGATCATCGACGACGAGCCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCAT
GAAGCTCGATACCCGCAGCGCACGCAACCTAAAGGAGGCGCGCGAGCTGCTGGCACGCGAGCACTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCAGCGGCCTTGAGCTGGTCCAGCACATCCAGCAACAGTACCCGCAACTGCCCGTGGCG
ATGATCACCGCCTATGGCAGCCTGGATACCGCCATCGGCGCACTCAAGGCCGGTGCGTTCGACTTCCTCACCAAACCGGT
GGACCTGAACCGCCTGCGCGAGCTGGTCAGCACCGCCCTGCGCCTGCGCGCACCCGCAGCCGAAGCGCCGGTGGACAGTC
GCCTGCTGGGCAGCTCGCCGCCGATGAAAACCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCACGCCTGATTCATGAGCAGGGCCCGCGCAGCGAAAAGCCATT
CGTGCCGGTCAATTGCGGTGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCAGCG
GCGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCAATGGTGGCACGCTGTTTCTCGACGAGGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGCGGTGCGCAGGAAGTGATGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGATCTCGCCAGCGAGGTCGCCGCAGGCCGTTTTCGCCAGGATCTCTACT
ACCGCCTGAACGTCATCGAACTGCGTGTACCGCCACTGCGCGAACGCCGCGAAGACATCGGCCTGCTCGCCGATGTCATG
CTGCGCCGTCTGGCGCAGGAATGCGGCGAGGCCACGGCCCGCCTGCATCCCGATGCCCTGGCCAAGCTGGAGAACTATCG
CTTTCCGGGCAACGTCCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAAGGCGATGAGATCAAGGCTG
GCGACCTGCGCCTGGCGGATAGCCCAGGCCTGCCGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTGGAGGAC
CACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAAACACGCTGGAACCGCACCGCGGCCGCCCAGCG
ACTGGGGCTGACCTTCCGCTCGATGCGTTACCGTCTCAAGAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A137YGV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854
  pilR Acinetobacter baumannii strain A118

50.545

100

0.521
  luxO Vibrio cholerae strain A1552

38.117

100

0.382