Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ64_RS09395 Genome accession   NZ_CP098544
Coordinates   1786456..1786878 (+) Length   140 a.a.
NCBI ID   WP_260244334.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781456..1791878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS09360 (NDQ64_09255) - 1781602..1782222 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  NDQ64_RS09365 (NDQ64_09260) - 1782421..1782797 (-) 377 Protein_1811 transposase -
  NDQ64_RS09370 (NDQ64_09265) - 1783106..1783231 (-) 126 Protein_1812 IS110 family transposase -
  NDQ64_RS09375 (NDQ64_09270) - 1783807..1784175 (+) 369 Protein_1813 pilin -
  NDQ64_RS12030 - 1784175..1784522 (+) 348 Protein_1814 pilin -
  NDQ64_RS09385 (NDQ64_09280) - 1784562..1784933 (+) 372 Protein_1815 pilin -
  NDQ64_RS09390 (NDQ64_09285) lpxC 1785427..1786350 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ64_RS09395 (NDQ64_09290) pilE 1786456..1786878 (+) 423 WP_260244334.1 pilin Machinery gene
  NDQ64_RS09400 (NDQ64_09295) - 1787543..1788229 (+) 687 WP_311201987.1 opacity family porin -
  NDQ64_RS09405 (NDQ64_09300) pilA 1788497..1789750 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ64_RS09410 (NDQ64_09305) msrAB 1789896..1791464 (+) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15036.92 Da        Isoelectric Point: 9.0313

>NTDB_id=696892 NDQ64_RS09395 WP_260244334.1 1786456..1786878(+) (pilE) [Neisseria gonorrhoeae strain 10296]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPENNSAAGVASASKIIGKYVKQVEVKNGVVTATMASTGVNKEIQ
GKKLSLWAKREDGSVKWFCGQPVKRTAKAGTDDVAKDDAADGIDTKHLPSTCRDTSSDAK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=696892 NDQ64_RS09395 WP_260244334.1 1786456..1786878(+) (pilE) [Neisseria gonorrhoeae strain 10296]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCCGAAAACAACAGCGCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCACAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGC
CAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGACGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGCG
ATACGTCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.139

100

0.721
  pilE Neisseria gonorrhoeae strain FA1090

72.464

98.571

0.714