Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | NDQ68_RS08065 | Genome accession | NZ_CP098542 |
| Coordinates | 1541310..1541759 (-) | Length | 149 a.a. |
| NCBI ID | WP_002214937.1 | Uniprot ID | A0AA44U8B7 |
| Organism | Neisseria gonorrhoeae strain 10704 | ||
| Function | DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1507864..1541061 | 1541310..1541759 | flank | 249 |
Gene organization within MGE regions
Location: 1507864..1541759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDQ68_RS07790 (NDQ68_07720) | - | 1507892..1508866 (-) | 975 | WP_003689550.1 | SIS domain-containing protein | - |
| NDQ68_RS07795 (NDQ68_07725) | tal | 1508963..1510018 (+) | 1056 | WP_003689551.1 | transaldolase | - |
| NDQ68_RS07800 (NDQ68_11755) | - | 1510030..1510164 (+) | 135 | WP_003703570.1 | hypothetical protein | - |
| NDQ68_RS07805 (NDQ68_07730) | - | 1510169..1510459 (+) | 291 | WP_003689553.1 | hypothetical protein | - |
| NDQ68_RS07810 (NDQ68_07735) | gluQRS | 1510476..1511363 (+) | 888 | WP_003693489.1 | tRNA glutamyl-Q(34) synthetase GluQRS | - |
| NDQ68_RS07815 (NDQ68_07740) | dusA | 1511433..1512449 (-) | 1017 | WP_003693487.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| NDQ68_RS07820 (NDQ68_07745) | - | 1512569..1513723 (+) | 1155 | WP_003693486.1 | tyrosine-type recombinase/integrase | - |
| NDQ68_RS07825 (NDQ68_07750) | - | 1513773..1514039 (-) | 267 | WP_003689557.1 | pyocin activator PrtN family protein | - |
| NDQ68_RS07830 (NDQ68_07755) | - | 1514147..1515295 (-) | 1149 | WP_134994054.1 | SAM-dependent methyltransferase | - |
| NDQ68_RS07835 (NDQ68_07765) | - | 1515292..1516275 (-) | 984 | WP_134994057.1 | hypothetical protein | - |
| NDQ68_RS07840 (NDQ68_07770) | - | 1516386..1516601 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| NDQ68_RS07845 (NDQ68_07775) | - | 1516653..1517144 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| NDQ68_RS07850 (NDQ68_07780) | - | 1517141..1517323 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| NDQ68_RS07855 (NDQ68_07785) | - | 1517463..1518149 (-) | 687 | WP_010951053.1 | phage replication initiation protein, NGO0469 family | - |
| NDQ68_RS07860 (NDQ68_07790) | - | 1518218..1518379 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| NDQ68_RS07865 (NDQ68_07795) | - | 1518376..1518651 (-) | 276 | WP_229931746.1 | NGO1622 family putative holin | - |
| NDQ68_RS07870 (NDQ68_07800) | - | 1518804..1519136 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| NDQ68_RS07875 (NDQ68_07805) | - | 1519277..1519472 (-) | 196 | Protein_1533 | hypothetical protein | - |
| NDQ68_RS07880 (NDQ68_07810) | - | 1519682..1520443 (+) | 762 | WP_012503753.1 | hypothetical protein | - |
| NDQ68_RS07885 (NDQ68_07815) | - | 1520532..1520948 (-) | 417 | WP_003700378.1 | hypothetical protein | - |
| NDQ68_RS07890 (NDQ68_07820) | - | 1520957..1521592 (-) | 636 | WP_225602681.1 | Panacea domain-containing protein | - |
| NDQ68_RS07895 (NDQ68_07825) | - | 1521723..1522124 (-) | 402 | WP_003691454.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| NDQ68_RS07900 (NDQ68_07830) | - | 1522226..1522408 (-) | 183 | WP_003689143.1 | type II toxin-antitoxin system HicA family toxin | - |
| NDQ68_RS07905 (NDQ68_07835) | - | 1522578..1523396 (-) | 819 | WP_003693474.1 | DUF3037 domain-containing protein | - |
| NDQ68_RS07910 (NDQ68_07840) | - | 1523671..1524426 (-) | 756 | WP_003693472.1 | S24 family peptidase | - |
| NDQ68_RS07915 (NDQ68_07845) | - | 1524563..1524748 (+) | 186 | WP_002238713.1 | Cro/CI family transcriptional regulator | - |
| NDQ68_RS07920 (NDQ68_07850) | - | 1524837..1524992 (+) | 156 | WP_003698902.1 | hypothetical protein | - |
| NDQ68_RS07925 (NDQ68_07855) | - | 1524969..1525157 (-) | 189 | WP_003691445.1 | hypothetical protein | - |
| NDQ68_RS07930 (NDQ68_07860) | - | 1525330..1525557 (+) | 228 | WP_003705596.1 | helix-turn-helix domain-containing protein | - |
| NDQ68_RS11880 | - | 1525554..1526508 (+) | 955 | Protein_1545 | helix-turn-helix domain-containing protein | - |
| NDQ68_RS07945 (NDQ68_07875) | - | 1526523..1527302 (+) | 780 | WP_025455898.1 | ATP-binding protein | - |
| NDQ68_RS07950 (NDQ68_07880) | - | 1527372..1527602 (+) | 231 | WP_033911192.1 | hypothetical protein | - |
| NDQ68_RS07955 (NDQ68_07885) | - | 1527616..1528110 (+) | 495 | WP_033911193.1 | DUF3310 domain-containing protein | - |
| NDQ68_RS07960 (NDQ68_07890) | - | 1528305..1528454 (+) | 150 | WP_003692854.1 | hypothetical protein | - |
| NDQ68_RS07965 (NDQ68_07895) | - | 1528482..1528763 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| NDQ68_RS07970 (NDQ68_07900) | - | 1528754..1529134 (+) | 381 | WP_033911195.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NDQ68_RS07975 (NDQ68_11760) | - | 1529151..1529279 (-) | 129 | WP_017147221.1 | hypothetical protein | - |
| NDQ68_RS07980 (NDQ68_07905) | - | 1529463..1530425 (-) | 963 | WP_050160654.1 | IS110 family transposase | - |
| NDQ68_RS07985 (NDQ68_07910) | - | 1530937..1531296 (-) | 360 | WP_003689732.1 | hypothetical protein | - |
| NDQ68_RS07990 (NDQ68_07915) | - | 1531417..1532502 (-) | 1086 | WP_003700139.1 | zonular occludens toxin domain-containing protein | - |
| NDQ68_RS07995 (NDQ68_07920) | - | 1532512..1532802 (-) | 291 | WP_003700141.1 | DUF2523 domain-containing protein | - |
| NDQ68_RS08000 (NDQ68_07925) | - | 1532803..1534368 (-) | 1566 | WP_167550560.1 | IgG-binding virulence factor TspB family protein | - |
| NDQ68_RS08005 (NDQ68_07930) | - | 1534310..1534627 (-) | 318 | WP_003689167.1 | DUF1132 family protein | - |
| NDQ68_RS08010 (NDQ68_07935) | - | 1534755..1535033 (-) | 279 | WP_003689168.1 | hypothetical protein | - |
| NDQ68_RS08015 (NDQ68_07940) | - | 1535040..1535258 (-) | 219 | WP_003691584.1 | major capsid protein | - |
| NDQ68_RS08020 (NDQ68_07945) | - | 1535332..1535529 (-) | 198 | WP_003689600.1 | hypothetical protein | - |
| NDQ68_RS08025 (NDQ68_07950) | - | 1535534..1535824 (-) | 291 | WP_002216601.1 | hypothetical protein | - |
| NDQ68_RS08030 (NDQ68_07955) | - | 1535869..1537218 (-) | 1350 | WP_229931405.1 | replication initiation factor domain-containing protein | - |
| NDQ68_RS08035 (NDQ68_07960) | - | 1537357..1537779 (-) | 423 | WP_003691751.1 | very short patch repair endonuclease | - |
| NDQ68_RS08040 (NDQ68_07965) | - | 1537785..1538381 (-) | 597 | WP_012503916.1 | TIGR02391 family protein | - |
| NDQ68_RS08045 (NDQ68_07970) | - | 1538571..1539428 (-) | 858 | WP_012503917.1 | ATP-binding protein | - |
| NDQ68_RS08050 (NDQ68_07975) | - | 1539442..1539900 (-) | 459 | WP_229931775.1 | DNA cytosine methyltransferase | - |
| NDQ68_RS08055 (NDQ68_07980) | - | 1539870..1540418 (-) | 549 | WP_324256009.1 | DNA cytosine methyltransferase | - |
| NDQ68_RS08060 (NDQ68_07985) | - | 1540787..1540933 (+) | 147 | WP_003691757.1 | hypothetical protein | - |
| NDQ68_RS08065 (NDQ68_07990) | comP | 1541310..1541759 (-) | 450 | WP_002214937.1 | type IV pilin protein | Machinery gene |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16834.81 Da Isoelectric Point: 9.7951
>NTDB_id=696838 NDQ68_RS08065 WP_002214937.1 1541310..1541759(-) (comP) [Neisseria gonorrhoeae strain 10704]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK
Nucleotide
Download Length: 450 bp
>NTDB_id=696838 NDQ68_RS08065 WP_002214937.1 1541310..1541759(-) (comP) [Neisseria gonorrhoeae strain 10704]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comP | Neisseria meningitidis 8013 |
99.329 |
100 |
0.993 |
| comP | Neisseria subflava NJ9703 |
49.66 |
98.658 |
0.49 |