Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NDN18_RS16355 Genome accession   NZ_CP098521
Coordinates   3395810..3396220 (-) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain Cl107     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3390810..3401220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS16325 (NDN18_16320) - 3390896..3391165 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  NDN18_RS16330 (NDN18_16325) rapZ 3391162..3392013 (-) 852 WP_000821671.1 RNase adapter RapZ -
  NDN18_RS16335 (NDN18_16330) panC 3392036..3392884 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  NDN18_RS16340 (NDN18_16335) panB 3392888..3393697 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NDN18_RS16345 (NDN18_16340) folK 3393743..3394225 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NDN18_RS16350 (NDN18_16345) pcnB 3394222..3395685 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  NDN18_RS16355 (NDN18_16350) comEA 3395810..3396220 (-) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDN18_RS16360 (NDN18_16355) mazG 3396189..3396995 (-) 807 WP_000359485.1 nucleoside triphosphate pyrophosphohydrolase -
  NDN18_RS16365 (NDN18_16360) - 3397107..3397880 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  NDN18_RS16370 (NDN18_16365) - 3397925..3400231 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=696579 NDN18_RS16355 WP_001200146.1 3395810..3396220(-) (comEA) [Acinetobacter baumannii strain Cl107]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=696579 NDN18_RS16355 WP_001200146.1 3395810..3396220(-) (comEA) [Acinetobacter baumannii strain Cl107]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412