Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NDK36_RS19995 Genome accession   NZ_CP098491
Coordinates   3727264..3727383 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain NB205     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3722264..3732383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS19975 (NDK36_19975) albG 3722428..3723129 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NDK36_RS19980 (NDK36_19980) ywhL 3723135..3724511 (-) 1377 WP_014481223.1 YncE family protein -
  NDK36_RS19985 (NDK36_19985) ywhK 3724550..3725905 (-) 1356 WP_014481224.1 YncE family protein -
  NDK36_RS22550 - 3725902..3726132 (-) 231 Protein_3887 hypothetical protein -
  NDK36_RS19990 (NDK36_19990) rapF 3726135..3727280 (+) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  NDK36_RS19995 (NDK36_19995) phrF 3727264..3727383 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NDK36_RS20000 (NDK36_20000) - 3727481..3727908 (+) 428 Protein_3890 YbaK/EbsC family protein -
  NDK36_RS20005 (NDK36_20005) speB 3727973..3728845 (-) 873 WP_003227545.1 agmatinase -
  NDK36_RS20010 (NDK36_20010) speE 3728906..3729736 (-) 831 WP_003227543.1 spermidine synthase -
  NDK36_RS20015 (NDK36_20015) pbpG 3729938..3732013 (+) 2076 WP_014481227.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=696327 NDK36_RS19995 WP_009968329.1 3727264..3727383(+) (phrF) [Bacillus subtilis strain NB205]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=696327 NDK36_RS19995 WP_009968329.1 3727264..3727383(+) (phrF) [Bacillus subtilis strain NB205]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487