Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   NDK36_RS18895 Genome accession   NZ_CP098491
Coordinates   3516332..3517489 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain NB205     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511332..3522489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS18865 (NDK36_18865) yvyF 3511585..3512004 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  NDK36_RS18870 (NDK36_18870) comFC 3512077..3512799 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NDK36_RS18875 (NDK36_18875) comFB 3512763..3513059 (-) 297 WP_003227989.1 late competence protein ComFB -
  NDK36_RS18880 (NDK36_18880) comFA 3513119..3514510 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NDK36_RS18885 (NDK36_18885) fakBA 3514617..3515462 (-) 846 WP_014481053.1 DegV family protein -
  NDK36_RS18890 (NDK36_18890) degU 3515560..3516249 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  NDK36_RS18895 (NDK36_18895) degS 3516332..3517489 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NDK36_RS18900 (NDK36_18900) - 3517706..3518359 (+) 654 WP_014481055.1 YigZ family protein -
  NDK36_RS18905 (NDK36_18905) - 3518359..3519351 (+) 993 WP_014481056.1 LCP family protein -
  NDK36_RS18910 (NDK36_18910) - 3519949..3520413 (+) 465 WP_225910700.1 hypothetical protein -
  NDK36_RS18915 (NDK36_18915) - 3520462..3520917 (+) 456 WP_014481057.1 hypothetical protein -
  NDK36_RS18920 (NDK36_18920) - 3520968..3521420 (+) 453 WP_014481058.1 hypothetical protein -
  NDK36_RS18925 (NDK36_18925) - 3521496..3522275 (+) 780 WP_014481059.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=696322 NDK36_RS18895 WP_003227983.1 3516332..3517489(-) (degS) [Bacillus subtilis strain NB205]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=696322 NDK36_RS18895 WP_003227983.1 3516332..3517489(-) (degS) [Bacillus subtilis strain NB205]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1