Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NDK36_RS18870 Genome accession   NZ_CP098491
Coordinates   3512077..3512799 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507077..3517799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS18835 (NDK36_18835) fliW 3507217..3507648 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NDK36_RS18840 (NDK36_18840) yviE 3507669..3508244 (-) 576 WP_014481045.1 DUF6470 family protein -
  NDK36_RS18845 (NDK36_18845) flgL 3508291..3509187 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  NDK36_RS18850 (NDK36_18850) flgK 3509198..3510721 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  NDK36_RS18855 (NDK36_18855) flgN 3510740..3511222 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NDK36_RS18860 (NDK36_18860) flgM 3511238..3511504 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NDK36_RS18865 (NDK36_18865) yvyF 3511585..3512004 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  NDK36_RS18870 (NDK36_18870) comFC 3512077..3512799 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NDK36_RS18875 (NDK36_18875) comFB 3512763..3513059 (-) 297 WP_003227989.1 late competence protein ComFB -
  NDK36_RS18880 (NDK36_18880) comFA 3513119..3514510 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NDK36_RS18885 (NDK36_18885) fakBA 3514617..3515462 (-) 846 WP_014481053.1 DegV family protein -
  NDK36_RS18890 (NDK36_18890) degU 3515560..3516249 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  NDK36_RS18895 (NDK36_18895) degS 3516332..3517489 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=696319 NDK36_RS18870 WP_014481051.1 3512077..3512799(-) (comFC) [Bacillus subtilis strain NB205]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=696319 NDK36_RS18870 WP_014481051.1 3512077..3512799(-) (comFC) [Bacillus subtilis strain NB205]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992