Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NDK36_RS18890 Genome accession   NZ_CP098491
Coordinates   3515560..3516249 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510560..3521249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS18855 (NDK36_18855) flgN 3510740..3511222 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NDK36_RS18860 (NDK36_18860) flgM 3511238..3511504 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NDK36_RS18865 (NDK36_18865) yvyF 3511585..3512004 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  NDK36_RS18870 (NDK36_18870) comFC 3512077..3512799 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NDK36_RS18875 (NDK36_18875) comFB 3512763..3513059 (-) 297 WP_003227989.1 late competence protein ComFB -
  NDK36_RS18880 (NDK36_18880) comFA 3513119..3514510 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NDK36_RS18885 (NDK36_18885) fakBA 3514617..3515462 (-) 846 WP_014481053.1 DegV family protein -
  NDK36_RS18890 (NDK36_18890) degU 3515560..3516249 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  NDK36_RS18895 (NDK36_18895) degS 3516332..3517489 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NDK36_RS18900 (NDK36_18900) - 3517706..3518359 (+) 654 WP_014481055.1 YigZ family protein -
  NDK36_RS18905 (NDK36_18905) - 3518359..3519351 (+) 993 WP_014481056.1 LCP family protein -
  NDK36_RS18910 (NDK36_18910) - 3519949..3520413 (+) 465 WP_225910700.1 hypothetical protein -
  NDK36_RS18915 (NDK36_18915) - 3520462..3520917 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=696321 NDK36_RS18890 WP_014481054.1 3515560..3516249(-) (degU) [Bacillus subtilis strain NB205]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=696321 NDK36_RS18890 WP_014481054.1 3515560..3516249(-) (degU) [Bacillus subtilis strain NB205]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996