Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NDK36_RS13220 Genome accession   NZ_CP098491
Coordinates   2451775..2452392 (-) Length   205 a.a.
NCBI ID   WP_014480312.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2446775..2457392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS13190 (NDK36_13190) rpsT 2447077..2447343 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  NDK36_RS13195 (NDK36_13195) holA 2447358..2448401 (-) 1044 WP_014480310.1 DNA polymerase III subunit delta -
  NDK36_RS13200 (NDK36_13200) - 2448441..2448590 (-) 150 WP_003229985.1 hypothetical protein -
  NDK36_RS13205 (NDK36_13205) yqzM 2448631..2448765 (+) 135 WP_003229983.1 YqzM family protein -
  NDK36_RS13210 (NDK36_13210) comEC 2448805..2451135 (-) 2331 WP_033881047.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NDK36_RS13215 (NDK36_13215) comEB 2451139..2451708 (-) 570 WP_003229978.1 ComE operon protein 2 -
  NDK36_RS13220 (NDK36_13220) comEA 2451775..2452392 (-) 618 WP_014480312.1 competence protein ComEA Machinery gene
  NDK36_RS13225 (NDK36_13225) comER 2452476..2453297 (+) 822 WP_014480313.1 late competence protein ComER -
  NDK36_RS13230 (NDK36_13230) yqeM 2453363..2454106 (-) 744 WP_014480314.1 class I SAM-dependent methyltransferase -
  NDK36_RS13235 (NDK36_13235) rsfS 2454103..2454459 (-) 357 WP_014480315.1 ribosome silencing factor -
  NDK36_RS13240 (NDK36_13240) yqeK 2454477..2455037 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NDK36_RS13245 (NDK36_13245) nadD 2455027..2455596 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  NDK36_RS13250 (NDK36_13250) yhbY 2455608..2455898 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  NDK36_RS13255 (NDK36_13255) aroE 2455892..2456734 (-) 843 WP_014480317.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21781.51 Da        Isoelectric Point: 4.7220

>NTDB_id=696303 NDK36_RS13220 WP_014480312.1 2451775..2452392(-) (comEA) [Bacillus subtilis strain NB205]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEEIAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=696303 NDK36_RS13220 WP_014480312.1 2451775..2452392(-) (comEA) [Bacillus subtilis strain NB205]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAATAGCAGTGCAGCAAGGTGGCGGAGGGTCAG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

99.512

100

0.995
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39