Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NDN13_RS18030 Genome accession   NZ_CP098480
Coordinates   3770508..3770891 (+) Length   127 a.a.
NCBI ID   WP_004652356.1    Uniprot ID   A0A2N0WJ47
Organism   Acinetobacter sp. C32I     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765508..3775891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS18000 (NDN13_17995) - 3765987..3766349 (+) 363 WP_251116431.1 DUF2004 domain-containing protein -
  NDN13_RS18005 (NDN13_18000) - 3766371..3766727 (+) 357 WP_251116432.1 DUF488 family protein -
  NDN13_RS18010 (NDN13_18005) - 3766780..3767124 (+) 345 WP_070075742.1 zinc ribbon domain-containing protein YjdM -
  NDN13_RS18015 (NDN13_18010) - 3767275..3767610 (+) 336 WP_251116433.1 YegP family protein -
  NDN13_RS18020 (NDN13_18015) - 3767663..3769378 (-) 1716 WP_251116434.1 proline--tRNA ligase -
  NDN13_RS18025 (NDN13_18020) - 3769575..3770228 (-) 654 WP_251116435.1 hypothetical protein -
  NDN13_RS18030 (NDN13_18025) pilG 3770508..3770891 (+) 384 WP_004652356.1 twitching motility response regulator PilG Regulator
  NDN13_RS18035 (NDN13_18030) - 3770912..3771274 (+) 363 WP_004652355.1 response regulator -
  NDN13_RS18040 (NDN13_18035) - 3771322..3771858 (+) 537 WP_251116436.1 chemotaxis protein CheW -
  NDN13_RS18045 (NDN13_18040) - 3771905..3773989 (+) 2085 WP_004652353.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14226.35 Da        Isoelectric Point: 4.7278

>NTDB_id=696179 NDN13_RS18030 WP_004652356.1 3770508..3770891(+) (pilG) [Acinetobacter sp. C32I]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=696179 NDN13_RS18030 WP_004652356.1 3770508..3770891(+) (pilG) [Acinetobacter sp. C32I]
ATGGAAGATAAATTTCAAAATTTGAAGGTCATGGTGATTGACGATTCAAAAACGATTCGTCGTACAGCTGAGACTTTATT
ACAACGTGAAGGTTGTGAAGTGATTACAGCGGTTGATGGCTTTGAAGCATTATCAAAAATTGCAGAAGCTAATCCAGATA
TCGTTTTTGTTGACATCATGATGCCTCGTTTAGACGGTTACCAAACCTGTGCATTAATTAAAAATTCTCTAAATTATCAA
AATATTCCAGTCATTATGTTGTCAAGCAAAGACGGTTTGTTTGATCAGGCGAAAGGGCGTGTTGTGGGGTCGGATGAATA
TTTAACCAAGCCATTCAGTAAAGATGAGCTGTTAAACGCGATTCGCAACCATGTTAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N0WJ47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

97.638

100

0.976
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37