Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NDN13_RS15780 Genome accession   NZ_CP098480
Coordinates   3304423..3305859 (-) Length   478 a.a.
NCBI ID   WP_251116138.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299423..3310859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS15765 (NDN13_15760) lptG 3300469..3301539 (+) 1071 WP_251116135.1 LPS export ABC transporter permease LptG -
  NDN13_RS15770 (NDN13_15765) gpmI 3301654..3303198 (+) 1545 WP_251116136.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NDN13_RS15775 (NDN13_15770) - 3303208..3304383 (+) 1176 WP_251116137.1 S41 family peptidase -
  NDN13_RS15780 (NDN13_15775) pilR 3304423..3305859 (-) 1437 WP_251116138.1 sigma-54 dependent transcriptional regulator Regulator
  NDN13_RS15785 (NDN13_15780) pilS 3305882..3307447 (-) 1566 WP_251116139.1 ATP-binding protein Regulator
  NDN13_RS15790 (NDN13_15785) - 3307465..3308100 (-) 636 WP_251116140.1 response regulator -
  NDN13_RS15795 (NDN13_15790) pbpG 3308311..3309375 (+) 1065 WP_251116141.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NDN13_RS15800 (NDN13_15795) - 3309528..3310148 (+) 621 WP_251116142.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53539.49 Da        Isoelectric Point: 6.2459

>NTDB_id=696168 NDN13_RS15780 WP_251116138.1 3304423..3305859(-) (pilR) [Acinetobacter sp. C32I]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWDLPAKSLSARAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRTSLANPTPSFSNT
ASEEAEPVPHSASPSMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=696168 NDN13_RS15780 WP_251116138.1 3304423..3305859(-) (pilR) [Acinetobacter sp. C32I]
ATGGCAACAAAACAACCACTCGTCTTATTGGTAGACGACGAAGAAGATTTATGTCTTTTAATGCAGATGACGCTAGCGCG
TATGGGCATCAAGACACATCTCGCCTATCGGGTCGAACAGGCAAAAAAGTTCTTTACTGAGTTCCAGTACGATGCTTGCT
TAACAGATTTAAATCTTCCAGATGGTAATGGTTTGGATCTGGTCAAACACGTGACACAGAACTATCCCAATACGCCTATT
GCGGTACTGACTGCATATGGCAATATGGATATTGCCATTGCAGCCTTAAAGGCAGGCGCATTTGACTTTGTCAGTAAGCC
TGTCAACCAGATGCATTTGGATCAATTAATCCAGAAAGCGTTGAACCGTCCACAGCCTGAACAAGAGGCAGCAGAAACAG
CTTTAGAGAATAAGCTATTAATTGGACGTTCTACACCCATTCAACAGCTCCGCATTGCCTTAAAGAAAATTGCACGTTCC
CAAGCCCCAGTATTTATTACGGGTGAATCAGGAACTGGCAAAGAAGTGGTTGCGAATCTGGTTCATCGTTTAAGTAACCG
TAGTGAAGGGCCATTTATTGCGATTAACTGTGGCGCGATTCCAACTGAATTGATGGAAAGCGAGCTGTTCGGGCATAAAA
AAGGCAGCTTTACTGGCGCAACTCAGGACAAGCAAGGTTTAATTCTGTCTGCACACGGCGGTAGTCTATTCTTGGATGAA
ATTGCCGAACTGCCTTTAAATATGCAGGTCAAATTACTACGGGCGGTGCAGGAAAAGAAAATTCGCCCAGTCGGTTCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGTCACCAAGACTTGGAGCTGTTGGTACAGCAGGGGCGCTTCC
GCCAAGACCTATTCTTCCGTATCCATGTCATGGACATTGTACTGCCGCCTTTACGTGAGCGTGGTCAGGATATTTTGTTA
TTGGCCAATCACTTTATTCAAAAGATTAGCCAAGAGTGGGATCTACCAGCGAAGTCCCTGTCTGCACGTGCAGAGCAATT
CTTATTGCAGCAATATTTCCCAGGCAACGTACGGGAATTACGCAATATTATTGAGCGGGCAATTACCTTAAGTGATGATG
ACAATATTGATTTGGCACATTTACAGACCGCCCCTTTACGTACTTCTCTGGCAAATCCAACGCCTTCTTTTTCAAATACG
GCATCAGAAGAAGCCGAACCAGTACCACACTCAGCCAGCCCAAGCATGAGTTCGAAGAAACTTCCACCAGAAGGCTTAGA
ACGTTATTTAGAGAATATCGAAAAAGAGATTCTTCTGAATGCGCTGAATCTCACCCATTGGAATCGAACTTTGGCTGCAA
AGAAATTAGGCATGACCTTCCGCTCTTTGCGCTATCGTTTAAAGAAATTTGGTTTAGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

82.845

100

0.828
  pilR Pseudomonas aeruginosa PAK

50.215

97.49

0.49