Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NDN13_RS15785 Genome accession   NZ_CP098480
Coordinates   3305882..3307447 (-) Length   521 a.a.
NCBI ID   WP_251116139.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300882..3312447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS15770 (NDN13_15765) gpmI 3301654..3303198 (+) 1545 WP_251116136.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NDN13_RS15775 (NDN13_15770) - 3303208..3304383 (+) 1176 WP_251116137.1 S41 family peptidase -
  NDN13_RS15780 (NDN13_15775) pilR 3304423..3305859 (-) 1437 WP_251116138.1 sigma-54 dependent transcriptional regulator Regulator
  NDN13_RS15785 (NDN13_15780) pilS 3305882..3307447 (-) 1566 WP_251116139.1 ATP-binding protein Regulator
  NDN13_RS15790 (NDN13_15785) - 3307465..3308100 (-) 636 WP_251116140.1 response regulator -
  NDN13_RS15795 (NDN13_15790) pbpG 3308311..3309375 (+) 1065 WP_251116141.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NDN13_RS15800 (NDN13_15795) - 3309528..3310148 (+) 621 WP_251116142.1 hypothetical protein -
  NDN13_RS15805 (NDN13_15800) - 3310168..3310950 (+) 783 WP_251116143.1 hypothetical protein -
  NDN13_RS15810 (NDN13_15805) thrC 3311017..3312156 (-) 1140 WP_016540808.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59150.05 Da        Isoelectric Point: 6.6149

>NTDB_id=696169 NDN13_RS15785 WP_251116139.1 3305882..3307447(-) (pilS) [Acinetobacter sp. C32I]
MLGKIASSVSQTVYRLGVWYSGYRLIISISLLLIYLLTAEQLANNYIYPFLYFYTLICYIAFNIFQLALLQLVPIQISKQ
LIFIFIIDVICLSLITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIITLFAVIMVVYQRFLGNFFDVNNLTHLGNSVF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLAVSLE
KTPLIKLQPDLFELIQFSNLEDGEEFSFESQQSPYTINVRVKHLIVPEQALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAHQLNMLSRMISKQAKRIDNIVEDTLAMARNKPTEPQIIELNPFFESLLNEDLSDAK
QRIQLSQTEQLNILFDEKQLRQVLINLIRNALRHNATDAPFIEVNVQLKDGRTCIDVIDFGTGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYIERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=696169 NDN13_RS15785 WP_251116139.1 3305882..3307447(-) (pilS) [Acinetobacter sp. C32I]
ATGTTAGGGAAAATTGCGTCGTCTGTTTCACAGACGGTCTATCGGCTTGGGGTGTGGTATAGCGGCTATCGACTGATCAT
TTCGATTAGCCTGCTATTAATTTATTTACTGACAGCTGAACAACTTGCCAATAACTATATTTATCCCTTTCTCTATTTTT
ATACACTGATTTGCTATATCGCATTCAACATTTTTCAGCTTGCTTTGCTACAACTTGTTCCAATACAAATCTCCAAGCAG
CTGATTTTTATCTTTATTATTGATGTTATTTGTCTCAGTTTAATTACCTTCTCTGCCGGTGGTCCAAATCTGCAGCTCAG
CTTGCTGTATGTGATTATTATTTTCTCCTCAGCAATTTTATTAAACGCACATCTTTCGCTGATCATTACGTTATTTGCAG
TCATCATGGTGGTTTACCAACGCTTTTTGGGTAACTTCTTTGATGTCAATAATTTAACCCATCTTGGCAATAGTGTTTTT
CTAGCCTTTCTGTTTTTCGTAGTACATGCGATTGGCCGTATTGCGGTGCAGCGTTTTAAGATTCTAGAAACCTTAACCTT
TCATCAATCAATTGAAATTCATCAACTGCAAAATATTAACCGCTATATTCTCGAACAAATTGAGGATGGCTATTTGGTAC
TGGATGAAAGCAATCATATTGTCTTAACCAATCCTGCCGCCAATACGTTGTTAGGTATTCATTTAGCTGTTTCTCTAGAA
AAAACACCACTGATTAAGTTACAGCCCGATCTATTTGAGCTGATCCAATTCAGTAATCTGGAAGATGGTGAAGAATTCAG
TTTTGAATCGCAACAAAGTCCTTACACCATCAATGTTCGGGTTAAACACTTGATTGTGCCTGAACAAGCGTTGGTGTTAC
TGATTTTAAAAGATGCACAGAAGCTGACCCAACAAGTTCAGCAACTGAAGCTCGCAGCCTTGGGGCAGCTTTCAGCCAGT
ATTGCCCATGAAATTCGCAATCCACTGGCTGCCATTGTACAGGCCAATGAATTATTAAAAGACAGCGATGCACATCAATT
GAATATGCTGTCACGCATGATCAGCAAACAAGCCAAACGCATTGACAACATCGTTGAAGACACCTTAGCCATGGCAAGGA
ATAAGCCAACAGAGCCACAAATCATTGAGCTGAATCCTTTCTTTGAAAGCCTGCTCAATGAAGACCTCTCCGATGCGAAA
CAACGTATTCAGCTGAGTCAGACCGAACAGCTCAATATCCTGTTTGACGAAAAACAATTGCGCCAAGTGCTGATTAACTT
AATTCGAAATGCACTGCGCCATAATGCGACCGATGCACCCTTTATTGAAGTCAATGTGCAGCTCAAAGATGGACGAACCT
GCATTGATGTCATCGATTTTGGGACGGGTGTCTCAAAACGAGATATTTCTCAGCTGTTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACCTGTCTCATAGCTTTTGTGAGGCAAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

PAS fold (PAS)

(203-298)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.922

99.04

0.643