Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NDN13_RS06835 Genome accession   NZ_CP098480
Coordinates   1389341..1390048 (+) Length   235 a.a.
NCBI ID   WP_251117680.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384341..1395048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS06815 (NDN13_06815) - 1384446..1384886 (-) 441 WP_251117677.1 hypothetical protein -
  NDN13_RS06820 (NDN13_06820) clpB 1385054..1387633 (-) 2580 WP_251117678.1 ATP-dependent chaperone ClpB -
  NDN13_RS06825 (NDN13_06825) - 1387897..1388697 (+) 801 WP_251117679.1 M23 family metallopeptidase -
  NDN13_RS06830 (NDN13_06830) - 1388770..1389192 (-) 423 WP_070075167.1 OsmC family protein -
  NDN13_RS06835 (NDN13_06835) crp 1389341..1390048 (+) 708 WP_251117680.1 cAMP-activated global transcriptional regulator CRP Regulator
  NDN13_RS06840 (NDN13_06840) - 1390247..1391023 (+) 777 WP_251117681.1 M48 family metallopeptidase -
  NDN13_RS06845 (NDN13_06845) - 1391082..1391960 (-) 879 WP_251117682.1 class I SAM-dependent methyltransferase -
  NDN13_RS06850 (NDN13_06850) - 1392058..1393578 (-) 1521 WP_251117683.1 NAD(P)/FAD-dependent oxidoreductase -
  NDN13_RS06855 (NDN13_06855) - 1393668..1394492 (-) 825 WP_251117684.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26585.19 Da        Isoelectric Point: 4.7478

>NTDB_id=696144 NDN13_RS06835 WP_251117680.1 1389341..1390048(+) (crp) [Acinetobacter sp. C32I]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFSEDEYDEED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=696144 NDN13_RS06835 WP_251117680.1 1389341..1390048(+) (crp) [Acinetobacter sp. C32I]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTGTCTCCAGGTCAACTACCTGAATCAGTTAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATCTTACGTGAAGATGACGAACGAGAAATCGTTGTCGCTTACCTCAATCCTGGCGATTTC
TTTGGTGAAATGGGTCTTTTTGAAAAGAACCCTCAACGTACCGCAGAAGTACGTACGCGAGATGTCTGTGAAATTGCAGA
AATTTCGTATGACAATTTTCATGAGTTAAGCAAGCAGTACCCAGATTTAAGTTACGCTGTGTTTGCTCAATTGGTCCGTC
GTCTAAAAAATACAACGCGTAAAGTGACTGATCTAGCCTTCATTGATGTGTCTGGTCGTATTGCACGCTGTCTAATTGAC
TTATCTGCTCAACCAGAGGCAATGATTTTACCGAATGGGCGTCAGATTCGTATTACTCGTCAAGAAATTGGTCGTATCGT
CGGTTGTTCTCGTGAAATGGTTGGACGTGTCCTCAAGACACTTGAAGATCAAGGCATGATTCAGACTGATGGTAAAGCAA
TCTTGATTTTTGATGCCTCTTTAGAAGAAAACACCTTCTCTGAAGATGAGTATGATGAGGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.894

100

0.949
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409