Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   NDN12_RS18060 Genome accession   NZ_CP098479
Coordinates   3931490..3932668 (+) Length   392 a.a.
NCBI ID   WP_251110411.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3926490..3937668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS18035 (NDN12_18030) - 3927097..3927570 (-) 474 WP_251110408.1 hypothetical protein -
  NDN12_RS18040 (NDN12_18035) guaD 3927758..3929074 (+) 1317 WP_251110409.1 guanine deaminase -
  NDN12_RS18045 (NDN12_18040) hpt 3929301..3929831 (+) 531 WP_005146279.1 hypoxanthine phosphoribosyltransferase -
  NDN12_RS18050 (NDN12_18045) - 3930064..3930315 (+) 252 WP_167251573.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NDN12_RS18055 (NDN12_18050) - 3930374..3931072 (-) 699 WP_251110410.1 DsbC family protein -
  NDN12_RS18060 (NDN12_18055) pilU 3931490..3932668 (+) 1179 WP_251110411.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NDN12_RS18065 (NDN12_18060) - 3932725..3933072 (-) 348 WP_251110412.1 hypothetical protein -
  NDN12_RS18070 (NDN12_18065) mnmE 3933221..3934576 (-) 1356 WP_251110413.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  NDN12_RS18075 (NDN12_18070) yidC 3934690..3936450 (-) 1761 WP_167251581.1 membrane protein insertase YidC -
  NDN12_RS18080 (NDN12_18075) yidD 3936453..3936776 (-) 324 WP_004803336.1 membrane protein insertion efficiency factor YidD -
  NDN12_RS18085 (NDN12_18080) rnpA 3936786..3937181 (-) 396 WP_004656857.1 ribonuclease P protein component -
  NDN12_RS18090 (NDN12_18085) rpmH 3937209..3937343 (-) 135 WP_000831329.1 50S ribosomal protein L34 -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 44469.04 Da        Isoelectric Point: 6.5076

>NTDB_id=696138 NDN12_RS18060 WP_251110411.1 3931490..3932668(+) (pilU) [Acinetobacter sp. C26G]
MYNAELLEEAKTFMFHMLSKVVEYEGSDLFITADFPPSIKLQGLMRPLGQQTLTADKTKLFAYSLMNEKQRQEFETEWEC
NFAINVPNVSRFRVNVFKQQLQIGMVIRTITSEIPTFQKLKLPESLKNVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWQHALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPEERRNQLLMDLSSNMKGIISQRLVRTQDGKGRRAAIEILLNTPLIADNILKGQFHALKELMSKS
RELGMQTFDQALFELYNEGAISYDEALRNADSVNELRLQIKLKSTRQEGAPVVMMTSLNVVQEQKAEEEQET

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=696138 NDN12_RS18060 WP_251110411.1 3931490..3932668(+) (pilU) [Acinetobacter sp. C26G]
ATGTATAATGCGGAATTATTAGAAGAAGCTAAAACCTTTATGTTCCATATGCTCAGCAAAGTAGTGGAATATGAGGGATC
AGATTTATTTATCACAGCAGATTTCCCACCAAGCATTAAGCTACAAGGCCTAATGCGACCTTTAGGGCAACAAACCTTAA
CCGCAGACAAAACTAAGCTATTTGCCTATAGTTTAATGAATGAAAAACAACGCCAAGAATTTGAAACAGAATGGGAATGC
AATTTTGCGATTAATGTGCCCAATGTTTCCCGTTTTCGGGTCAATGTATTTAAACAACAGCTGCAAATTGGCATGGTTAT
TCGGACCATTACCTCCGAAATTCCAACCTTTCAAAAATTAAAACTACCAGAATCATTAAAAAATGTGATTATGGAAAAGC
GTGGCTTGGTTTTGGTTGTTGGAGGAACGGGTTCAGGTAAATCGACCTCATTAGCTGCCATGATTGACCATCGTAATGAA
AACTCAGCAGGGCATATCATTACCGTTGAAGATCCAGTGGAATATGTGCATAAACATAAAAAATCGATGATTACCCATCG
TGAAGTGGGGGTTGATTGCCATTCATGGCAACATGCCTTGAAAAACACGCTACGTCAGGCGCCTGATGTGATTCTGATTG
GTGAAATCCGTGATACTGAAACCATGGAACACGCGATTGCCTTTGCGGAAACAGGGCATTTATGTTTAGGCACATTACAC
GCCAACAATGCCAACCAAGCCTTGGATCGAATTATTAACTTTTTCCCAGAAGAGCGTCGCAATCAGTTACTGATGGATCT
TTCATCCAATATGAAAGGGATTATTTCGCAGCGTTTGGTACGCACCCAAGATGGTAAAGGACGTCGTGCCGCAATTGAAA
TTTTGCTAAATACCCCATTAATTGCAGACAATATTCTCAAAGGCCAGTTCCATGCACTGAAAGAGCTTATGAGCAAATCG
CGTGAACTGGGCATGCAAACCTTCGACCAAGCTTTATTTGAGCTCTATAACGAAGGTGCGATTAGCTATGATGAAGCACT
ACGCAATGCCGATTCTGTGAATGAATTACGTTTACAGATCAAGCTAAAAAGTACCCGTCAAGAAGGTGCACCCGTTGTAA
TGATGACTTCATTAAATGTGGTACAAGAACAAAAAGCAGAGGAAGAGCAAGAAACTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(103-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.632

88.776

0.538
  pilU Acinetobacter baylyi ADP1

56.196

88.52

0.497
  pilU Vibrio cholerae strain A1552

52.975

90.051

0.477