Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NDN12_RS07185 Genome accession   NZ_CP098479
Coordinates   1598955..1599662 (-) Length   235 a.a.
NCBI ID   WP_004654102.1    Uniprot ID   N9PJZ4
Organism   Acinetobacter sp. C26G     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593955..1604662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS07165 (NDN12_07160) - 1594498..1595322 (+) 825 WP_251111226.1 SDR family NAD(P)-dependent oxidoreductase -
  NDN12_RS07170 (NDN12_07165) - 1595416..1596936 (+) 1521 WP_251111227.1 NAD(P)/FAD-dependent oxidoreductase -
  NDN12_RS07175 (NDN12_07170) - 1597032..1597910 (+) 879 WP_251111228.1 class I SAM-dependent methyltransferase -
  NDN12_RS07180 (NDN12_07175) - 1597979..1598755 (-) 777 WP_251111229.1 M48 family metallopeptidase -
  NDN12_RS07185 (NDN12_07180) crp 1598955..1599662 (-) 708 WP_004654102.1 cAMP-activated global transcriptional regulator CRP Regulator
  NDN12_RS07190 (NDN12_07185) - 1599811..1600233 (+) 423 WP_167251467.1 OsmC family protein -
  NDN12_RS07195 (NDN12_07190) - 1600306..1601106 (-) 801 WP_251111230.1 M23 family metallopeptidase -
  NDN12_RS07200 (NDN12_07195) clpB 1601370..1603949 (+) 2580 WP_251111231.1 ATP-dependent chaperone ClpB -
  NDN12_RS07205 (NDN12_07200) - 1604117..1604557 (+) 441 WP_251111232.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26571.16 Da        Isoelectric Point: 4.7426

>NTDB_id=696115 NDN12_RS07185 WP_004654102.1 1598955..1599662(-) (crp) [Acinetobacter sp. C26G]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFSEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=696115 NDN12_RS07185 WP_004654102.1 1598955..1599662(-) (crp) [Acinetobacter sp. C26G]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTGTCTCCAGGTCAACTACCTGAATCAGTTAAAGCTTTGCTAAA
ACGTGCTCATATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATCTTACGTGAAGATGACGAACGTGAAATTGTTGTTGCCTATCTAAACCCAGGCGATTTC
TTTGGTGAAATGGGGCTTTTTGAAAAGAACCCTCAACGTACCGCAGAAGTACGTACACGAGATGTCTGTGAAATTGCAGA
AATCTCTTACGACAATTTCCACGAGTTAAGCAAACAATATCCAGATTTAAGCTATGCTGTGTTTGCTCAATTGGTACGTC
GTCTTAAAAATACAACACGTAAAGTGACTGATTTGGCCTTCATTGATGTGTCAGGTCGTATTGCACGTTGCCTAATTGAC
TTATCTGCTCAACCAGAAGCAATGATTTTGCCGAACGGTCGTCAGATTCGTATCACCCGCCAAGAAATTGGTCGTATCGT
CGGTTGTTCTCGTGAAATGGTTGGACGTGTCCTCAAGACACTTGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCAA
TCTTAATTTTTGATGCTTCTTTAGAAGAAAATACCTTCTCTGAAGATGAGTATGATGACGAAGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9PJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.468

100

0.945
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409