Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDN12_RS01575 Genome accession   NZ_CP098479
Coordinates   340102..340647 (+) Length   181 a.a.
NCBI ID   WP_285292130.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335102..345647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01570 (NDN12_01570) - 335618..340100 (+) 4483 Protein_301 pilus assembly protein -
  NDN12_RS01575 (NDN12_01575) comE 340102..340647 (+) 546 WP_285292130.1 type IV pilin protein Machinery gene
  NDN12_RS01580 (NDN12_01580) pilE 340647..341099 (+) 453 WP_251110588.1 type IV pilin protein Machinery gene
  NDN12_RS01585 (NDN12_01585) - 341482..342108 (+) 627 WP_251110589.1 GspH/FimT family pseudopilin -
  NDN12_RS01590 (NDN12_01590) pilV 342105..342593 (+) 489 WP_251110590.1 type IV pilus modification protein PilV Machinery gene
  NDN12_RS01595 (NDN12_01595) - 342595..343620 (+) 1026 WP_251110591.1 PilW family protein -
  NDN12_RS01600 (NDN12_01600) pilX 343617..344369 (+) 753 WP_251110592.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19716.59 Da        Isoelectric Point: 8.4762

>NTDB_id=696103 NDN12_RS01575 WP_285292130.1 340102..340647(+) (comE) [Acinetobacter sp. C26G]
MINIPHRSGFTFIELMIVVVIVAIFAAIAIPSYQHFTRRAIAAQAQQEIQKLAEQLERHKSKNFTYKGFNARYLYATPPS
PRVDSFDSVTQKLSLPLESANPIYTVTILDGGNANPLLTASSAEGQSWVITAISSDIKNFSFVLTSAGMRCKTITPTNIN
INPGASIPPAKVECGAGSEDW

Nucleotide


Download         Length: 546 bp        

>NTDB_id=696103 NDN12_RS01575 WP_285292130.1 340102..340647(+) (comE) [Acinetobacter sp. C26G]
ATGATAAATATACCGCATCGCTCAGGATTTACCTTTATTGAATTGATGATTGTAGTTGTAATTGTTGCAATTTTTGCAGC
AATTGCAATTCCTAGTTATCAGCATTTTACACGTCGAGCAATAGCAGCACAGGCACAGCAAGAAATTCAAAAACTTGCTG
AGCAATTGGAAAGACATAAGTCTAAAAATTTTACTTATAAAGGTTTTAATGCAAGATATTTATATGCAACACCACCATCC
CCAAGAGTTGATAGTTTTGATTCTGTAACTCAAAAACTCTCTCTACCTTTAGAGAGTGCTAATCCGATCTATACAGTTAC
TATTTTGGATGGAGGTAATGCTAATCCCTTATTAACAGCATCTAGTGCAGAAGGGCAGAGCTGGGTAATTACTGCAATAA
GTAGTGATATAAAAAATTTTTCTTTTGTCCTTACGAGTGCTGGTATGAGATGTAAAACAATTACGCCAACCAATATTAAT
ATTAACCCTGGTGCAAGCATCCCACCTGCCAAGGTGGAGTGTGGTGCAGGAAGTGAGGACTGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

52.273

97.238

0.508
  pilY2 Acinetobacter baumannii D1279779

43.931

95.58

0.42