Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NDN12_RS01600 Genome accession   NZ_CP098479
Coordinates   343617..344369 (+) Length   250 a.a.
NCBI ID   WP_251110592.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338617..349369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01575 (NDN12_01575) comE 340102..340647 (+) 546 WP_285292130.1 type IV pilin protein Machinery gene
  NDN12_RS01580 (NDN12_01580) pilE 340647..341099 (+) 453 WP_251110588.1 type IV pilin protein Machinery gene
  NDN12_RS01585 (NDN12_01585) - 341482..342108 (+) 627 WP_251110589.1 GspH/FimT family pseudopilin -
  NDN12_RS01590 (NDN12_01590) pilV 342105..342593 (+) 489 WP_251110590.1 type IV pilus modification protein PilV Machinery gene
  NDN12_RS01595 (NDN12_01595) - 342595..343620 (+) 1026 WP_251110591.1 PilW family protein -
  NDN12_RS01600 (NDN12_01600) pilX 343617..344369 (+) 753 WP_251110592.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN12_RS01605 (NDN12_01605) - 344382..348890 (+) 4509 WP_251110593.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27142.85 Da        Isoelectric Point: 8.4551

>NTDB_id=696106 NDN12_RS01600 WP_251110592.1 343617..344369(+) (pilX) [Acinetobacter sp. C26G]
MRYVQRGSTLIVVLMIVLMITIVGTLAIRQSISSLKLVSNHQIQALLAQNADAALMYFQDPNTQQNLASANGVVGFFKNE
NNKNAELVFCFSGPNPFALSKAAYRLNSTAFEPIATNGGACKIDPNNATNDTASQSSGRKQVVTQVYIKREIGSTAPFAD
LSRGTEVLGAKTENNIRLRVYVVSVMQGLLTSDALFTADNDIKKGCLTKSIDNNGANDVATCLKQNTEKPIYNIQVAEYR
FLSDFEPSSS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=696106 NDN12_RS01600 WP_251110592.1 343617..344369(+) (pilX) [Acinetobacter sp. C26G]
ATGAGATATGTTCAACGAGGCTCAACATTGATTGTTGTACTGATGATCGTATTGATGATCACGATTGTCGGGACGCTGGC
GATTCGTCAAAGTATCAGTTCGCTCAAGTTGGTGAGTAATCATCAAATACAGGCACTACTGGCACAAAATGCGGATGCCG
CACTGATGTATTTTCAAGATCCCAATACGCAGCAGAATTTGGCTTCAGCCAATGGTGTAGTCGGGTTCTTTAAAAATGAA
AATAACAAAAATGCTGAGTTGGTATTTTGTTTTTCTGGTCCAAACCCATTTGCATTAAGTAAAGCTGCTTATCGCTTAAA
TAGTACGGCTTTTGAGCCAATAGCTACTAATGGTGGTGCCTGTAAGATTGATCCAAATAATGCAACTAATGATACAGCAT
CTCAGTCAAGTGGCCGTAAACAGGTGGTTACACAGGTTTATATTAAAAGAGAAATTGGATCTACAGCCCCTTTTGCAGAT
TTGTCTCGTGGCACAGAAGTGTTGGGTGCAAAAACTGAAAATAATATTCGCTTACGCGTCTATGTTGTATCTGTGATGCA
GGGCTTACTTACCTCTGATGCTTTATTTACAGCAGATAACGATATTAAAAAAGGTTGTTTAACCAAAAGTATCGACAACA
ACGGCGCCAACGATGTTGCCACTTGTTTAAAACAAAATACAGAAAAACCGATATATAACATACAAGTCGCAGAATATCGT
TTCTTGTCTGACTTTGAACCTTCGAGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

50.602

99.6

0.504