Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NDN11_RS14745 Genome accession   NZ_CP098478
Coordinates   3228067..3228450 (-) Length   127 a.a.
NCBI ID   WP_004802929.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223067..3233450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS14730 (NDN11_14725) - 3224977..3227061 (-) 2085 WP_167249759.1 methyl-accepting chemotaxis protein -
  NDN11_RS14735 (NDN11_14730) - 3227108..3227644 (-) 537 WP_005206065.1 chemotaxis protein CheW -
  NDN11_RS14740 (NDN11_14735) - 3227684..3228046 (-) 363 WP_004652355.1 response regulator -
  NDN11_RS14745 (NDN11_14740) pilG 3228067..3228450 (-) 384 WP_004802929.1 twitching motility response regulator PilG Regulator
  NDN11_RS14750 (NDN11_14745) - 3228730..3229383 (+) 654 WP_167249761.1 hypothetical protein -
  NDN11_RS14755 (NDN11_14750) - 3229580..3231295 (+) 1716 WP_251110062.1 proline--tRNA ligase -
  NDN11_RS14760 (NDN11_14755) - 3231350..3231685 (-) 336 WP_167249766.1 YegP family protein -
  NDN11_RS14765 (NDN11_14760) - 3231833..3232177 (-) 345 WP_167249768.1 zinc ribbon domain-containing protein YjdM -
  NDN11_RS14770 (NDN11_14765) - 3232229..3232585 (-) 357 WP_251110063.1 DUF488 domain-containing protein -
  NDN11_RS14775 (NDN11_14770) - 3232610..3232972 (-) 363 WP_167249773.1 DUF2004 domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14212.33 Da        Isoelectric Point: 4.7172

>NTDB_id=696078 NDN11_RS14745 WP_004802929.1 3228067..3228450(-) (pilG) [Acinetobacter sp. C26M]
MDDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=696078 NDN11_RS14745 WP_004802929.1 3228067..3228450(-) (pilG) [Acinetobacter sp. C26M]
ATGGACGATAAATTTCAAAATTTAAAGGTGATGGTGATTGACGATTCAAAAACGATTCGCCGTACAGCTGAGACCTTGTT
ACAACGTGAAGGTTGTGAAGTGATCACTGCGGTTGATGGCTTTGAAGCATTGTCAAAAATTGCTGAAGCCAATCCAGATA
TCGTTTTTGTAGACATCATGATGCCTCGTTTAGACGGTTATCAAACCTGTGCATTAATCAAAAATTCTCTAAATTATCAA
AATATTCCAGTAATTATGTTGTCAAGCAAAGACGGTTTGTTTGATCAGGCTAAAGGGCGTGTTGTGGGGTCGGATGAATA
TTTAACGAAGCCATTTAGTAAAGATGAGTTGTTAAACGCGATTCGCAACCACGTTAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

96.85

100

0.969
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37