Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC855_RS12035 Genome accession   NZ_CP098472
Coordinates   2103002..2103166 (-) Length   54 a.a.
NCBI ID   WP_003699316.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10612     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098002..2108166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC855_RS11005 (NC855_10925) msrAB 2098479..2100047 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC855_RS11010 (NC855_10930) pilA 2100193..2101446 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC855_RS11015 (NC855_10935) - 2101524..2101697 (-) 174 WP_167550559.1 hypothetical protein -
  NC855_RS11020 (NC855_10940) - 2101711..2102571 (-) 861 WP_267747190.1 opacity family porin -
  NC855_RS12035 pilE 2103002..2103166 (-) 165 WP_003699316.1 hypothetical protein Machinery gene
  NC855_RS11030 (NC855_10950) pilE 2103139..2103507 (-) 369 WP_267747191.1 pilin Machinery gene
  NC855_RS11035 (NC855_10955) - 2103876..2104019 (-) 144 WP_012503975.1 hypothetical protein -
  NC855_RS11045 (NC855_10965) - 2104322..2104665 (-) 344 Protein_2132 pilin -
  NC855_RS12040 - 2104719..2104871 (-) 153 Protein_2133 pilin -
  NC855_RS11055 (NC855_10975) - 2105005..2105398 (-) 394 Protein_2134 pilin -
  NC855_RS11060 (NC855_10980) - 2105935..2106278 (-) 344 Protein_2135 pilin -
  NC855_RS11065 (NC855_10985) - 2106278..2106618 (-) 341 Protein_2136 pilin -
  NC855_RS11070 (NC855_10990) - 2106618..2107010 (-) 393 Protein_2137 pilin -
  NC855_RS11075 (NC855_11850) - 2107760..2108023 (-) 264 WP_411268514.1 hypothetical protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 5832.54 Da        Isoelectric Point: 7.8352

>NTDB_id=696007 NC855_RS12035 WP_003699316.1 2103002..2103166(-) (pilE) [Neisseria gonorrhoeae strain 10612]
MGRRENGSVKWFCGQPVTRADDAVKAGTDAVTADTTGKDKIETKHLPSTCRDLP

Nucleotide


Download         Length: 165 bp        

>NTDB_id=696007 NC855_RS12035 WP_003699316.1 2103002..2103166(-) (pilE) [Neisseria gonorrhoeae strain 10612]
GTGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGACGACGCCGTCAAAGCCGG
CACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCTGC
CGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.588

94.444

0.667
  pilE Neisseria gonorrhoeae strain FA1090

56.863

94.444

0.537