Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NC852_RS06110 Genome accession   NZ_CP098466
Coordinates   1157139..1157588 (-) Length   149 a.a.
NCBI ID   WP_263584053.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10720     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152139..1162588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC852_RS06080 (NC852_06040) - 1153186..1153608 (-) 423 WP_003691751.1 very short patch repair endonuclease -
  NC852_RS06085 (NC852_06045) - 1153614..1154210 (-) 597 WP_012503916.1 TIGR02391 family protein -
  NC852_RS06090 (NC852_06050) - 1154400..1155257 (-) 858 WP_012503917.1 ATP-binding protein -
  NC852_RS06095 (NC852_06055) - 1155271..1155642 (-) 372 WP_012503918.1 DNA cytosine methyltransferase -
  NC852_RS06100 (NC852_06060) - 1155639..1156247 (-) 609 WP_080229275.1 DNA cytosine methyltransferase -
  NC852_RS06105 (NC852_06065) - 1156616..1156762 (+) 147 WP_003691757.1 hypothetical protein -
  NC852_RS06110 (NC852_06070) comP 1157139..1157588 (-) 450 WP_263584053.1 type IV pilin protein Machinery gene
  NC852_RS06115 (NC852_06075) comE 1157676..1158071 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NC852_RS06120 (NC852_06080) - 1158176..1158292 (-) 117 Protein_1195 competence protein ComE -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16846.86 Da        Isoelectric Point: 9.7951

>NTDB_id=695834 NC852_RS06110 WP_263584053.1 1157139..1157588(-) (comP) [Neisseria gonorrhoeae strain 10720]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQISTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=695834 NC852_RS06110 WP_263584053.1 1157139..1157588(-) (comP) [Neisseria gonorrhoeae strain 10720]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAATATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483