Detailed information NTG0695599

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NCG89_RS05250
• Genome accession: NZ_CP098455
• Coordinates: 1119815..1121179 (+)
• Length: 454 a.a.
• NCBI ID: WP_251088722.1
• Uniprot ID: -
• Organism: Spongiibacter taiwanensis strain SPT1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1114815..1126179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCG89_RS05235 (NCG89_05235)	-	1115290..1116156 (+)	867	WP_251088719.1	outer membrane protein assembly factor BamD	-
NCG89_RS05240 (NCG89_05240)	-	1116387..1118015 (-)	1629	WP_251088720.1	NAD+ synthase	-
NCG89_RS05245 (NCG89_05245)	-	1118211..1119809 (+)	1599	WP_251088721.1	HAMP domain-containing sensor histidine kinase	-
NCG89_RS05250 (NCG89_05250)	pilR	1119815..1121179 (+)	1365	WP_251088722.1	sigma-54 dependent transcriptional regulator	Regulator
NCG89_RS05255 (NCG89_05255)	-	1121215..1125099 (-)	3885	WP_251088723.1	PilC/PilY family type IV pilus protein	-
NCG89_RS05260 (NCG89_05260)	-	1125137..1125688 (-)	552	WP_251088724.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 50223.39 Da
• Isoelectric Point: 5.0961

>NTDB_id=695599 NCG89_RS05250 WP_251088722.1 1119815..1121179(+) (pilR) [Spongiibacter taiwanensis strain SPT1]
MNKHATQVLIIDDEPDIRELLDITISRMGLHTLTASSVAEALERLQQGNISLCLTDIKLPDGSGMDIVKFIQTCENPAPV
AVLTAFGSMELAVEALKCGAFDFINKPVSVEQLRNLVKSALRLESRRSAVDAGNQMRLLGETQAIKTLRDQIGKLARSQA
PVYISGESGSGKEVVARLIHANGPRSDAPFVPVNCGAIPGELVESEFFGHVKGSFTGAYDHKEGLFEAANGGTLFLDEVA
DLPLNMQVKLLRAIQEKAIRRVGSNQEIPVDVRILSATHKDLSRAVAAEHFRSDLFYRINVIELQVPSLRDRTPDIPILS
EFILEKISREWGMEAPVLSESALKALERYPFPGNVRELENIIERAATLCEGGSISAEDLSLPSDTRPLVANQDAVNEPHL
QNALGRLEEYMAEIEKEIISEALEKYRWNKTESAHALGVTFRQFRYKLKKYELD

Nucleotide

• Length: 1365 bp

>NTDB_id=695599 NCG89_RS05250 WP_251088722.1 1119815..1121179(+) (pilR) [Spongiibacter taiwanensis strain SPT1]
ATGAATAAACACGCTACTCAGGTTTTGATTATTGACGATGAACCCGATATTCGGGAGCTTCTGGATATCACCATCAGTCG
CATGGGGCTGCACACCCTTACCGCCTCAAGCGTAGCAGAGGCACTGGAGCGGCTGCAGCAGGGAAATATCAGTCTGTGTC
TCACCGACATTAAGCTCCCCGACGGCTCGGGTATGGACATCGTTAAGTTTATTCAAACCTGCGAAAACCCCGCGCCGGTG
GCGGTGCTCACGGCCTTTGGCAGCATGGAGCTGGCTGTGGAGGCACTTAAATGCGGCGCCTTCGACTTCATCAATAAACC
CGTTTCGGTTGAACAGCTGCGCAACCTGGTGAAATCGGCCCTGCGCCTGGAAAGCCGCCGGAGCGCTGTTGATGCCGGCA
ACCAAATGCGCCTGCTTGGCGAAACCCAAGCCATCAAAACCCTGCGCGATCAAATCGGCAAGTTAGCCCGCAGCCAAGCA
CCGGTGTATATCAGTGGCGAATCCGGTAGCGGCAAAGAAGTGGTCGCCCGCCTGATTCACGCCAATGGCCCACGGAGCGA
TGCGCCTTTTGTGCCGGTGAACTGCGGCGCCATTCCGGGCGAACTGGTGGAAAGCGAGTTTTTTGGTCACGTCAAAGGCA
GCTTTACCGGTGCCTATGACCACAAAGAAGGGCTTTTTGAAGCGGCGAACGGTGGCACACTGTTCCTCGACGAAGTTGCC
GACCTCCCTCTCAACATGCAGGTTAAGCTGCTACGGGCGATTCAGGAAAAGGCCATTCGCCGGGTGGGCTCCAATCAGGA
AATCCCCGTGGATGTGCGAATTCTTAGCGCCACCCACAAAGACCTTAGCCGGGCAGTGGCCGCCGAGCATTTTCGCAGCG
ATCTGTTCTACCGCATTAACGTGATTGAATTGCAGGTTCCCAGCCTTCGAGATCGAACACCAGACATCCCGATTCTGTCC
GAATTTATTTTGGAAAAAATCAGCCGCGAATGGGGAATGGAGGCGCCAGTGCTGAGCGAGTCAGCACTAAAAGCGCTGGA
GCGCTATCCCTTCCCCGGCAACGTGCGGGAGCTGGAAAATATTATCGAACGTGCCGCTACGCTGTGTGAGGGCGGCAGCA
TCTCCGCCGAAGACCTGTCTCTACCCAGCGATACCAGACCGCTGGTAGCAAACCAGGACGCCGTAAACGAGCCCCACCTG
CAAAATGCGCTGGGCAGGTTGGAGGAGTATATGGCCGAGATCGAAAAAGAAATAATCAGCGAAGCCCTGGAGAAATACCG
GTGGAATAAAACCGAGTCGGCCCATGCGCTAGGCGTGACCTTTCGGCAGTTCCGCTACAAGTTGAAAAAATACGAATTGG
ACTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.758	99.339	0.584
pilR	Acinetobacter baumannii strain A118	48.043	100	0.487
luxO	Vibrio cholerae strain A1552	37.701	95.815	0.361