Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NCL52_RS18895 Genome accession   NZ_CP098417
Coordinates   3680587..3680706 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain N2-10     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3675587..3685706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS18875 (NCL52_18875) albG 3675750..3676451 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NCL52_RS18880 (NCL52_18880) ywhL 3676457..3677833 (-) 1377 WP_086344439.1 YncE family protein -
  NCL52_RS18885 (NCL52_18885) ywhK 3677873..3679228 (-) 1356 WP_086344440.1 YncE family protein -
  NCL52_RS20800 - 3679225..3679455 (-) 231 WP_024572000.1 hypothetical protein -
  NCL52_RS18890 (NCL52_18890) rapF 3679458..3680603 (+) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  NCL52_RS18895 (NCL52_18895) phrF 3680587..3680706 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  NCL52_RS18900 (NCL52_18900) - 3680804..3681266 (+) 463 Protein_3674 YbaK/EbsC family protein -
  NCL52_RS18905 (NCL52_18905) speB 3681298..3682170 (-) 873 WP_003227545.1 agmatinase -
  NCL52_RS18910 (NCL52_18910) speE 3682231..3683061 (-) 831 WP_003227543.1 spermidine synthase -
  NCL52_RS18915 (NCL52_18915) pbpG 3683263..3685338 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=695415 NCL52_RS18895 WP_041334633.1 3680587..3680706(+) (phrF) [Bacillus subtilis strain N2-10]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=695415 NCL52_RS18895 WP_041334633.1 3680587..3680706(+) (phrF) [Bacillus subtilis strain N2-10]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487